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Hello, I am trying to benchmark the Mouse Hypothalamic Preoptic Region MERFISH dataset (https://datadryad.org/stash/dataset/doi:10.5061/dryad.8t8s248) using different methods since it was used in the …
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Thanks for the great work! The tutorial gives an example on how to convert h5 to h5ad.
> #Read original 10x_h5 data and save it to h5ad
> from scanpy import read_10x_h5
> adata = read_10x_h5("../t…
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It seems that the following tests on the master branch if scanpy is also installed when the tests run:
I added this to `requirements_tests.txt`:
```
scanpy==1.4.6
```
pytest results in travis…
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The `ds` should be changed to `object`. Otherwise it throws error `Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'as.matrix': object …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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Hello, I am a newbie in single cell analysis, currently familiar with R but not too familiar with python, I have a lot of problems in using your software to process my own data, I hope I can get some …
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circe uses snakeyaml to parse YAML into Json. snakeyaml support YAML 1.1, and thus by extension viash can use achors and aliases.
For example:
```yaml
functionality:
name: &name foo
name…
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Hi, STOmics developer,
I am running the stereoPipeline_v7.1_manual_part2.sh. It always exited at the step cell_cluster and throw the Error message as " The number of threads must be between 1 an…
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Hello,
An error was encountered when I read the arrow file with the following input:
`adata = ArchR_h5ad.read_arrow('S5.arrow', use_matrix="TileMatrix")`
Was it due to a lot of variables with…