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EBISPOT
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scxa_2_cxg
Apache License 2.0
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Update `pandasaurus-cxg` to create metadata on other `obs` values
#44
anitacaron
closed
4 days ago
0
Update pandasaurus-cxg and update neo4j2owl-config.yaml
#43
anitacaron
closed
1 week ago
1
Upload graphs for VFB experiments
#42
anitacaron
closed
1 week ago
0
Update values in `uns`
#41
anitacaron
closed
1 week ago
0
Get assay depending on donor_id; other fixes
#40
anitacaron
closed
1 month ago
0
Read IDF file by row
#39
anitacaron
closed
1 month ago
0
Check for inferred and author cell type before defining as cell type
#38
anitacaron
closed
1 month ago
0
Double-check the suspension_type mapping
#37
anitacaron
opened
1 month ago
1
Error when processing E-MTAB-9444: “KeyError: 'MAGE-TAB Version'”
#36
gouttegd
closed
1 month ago
0
Error when processing E-MTAB-8698: “Grouper for 'cell_type' not 1-dimensional”
#35
gouttegd
closed
1 month ago
2
Add `donor_id` and `suspension_type` mapping
#34
anitacaron
closed
1 month ago
0
Add dataset curie and schema reference to `uns`
#33
anitacaron
closed
2 months ago
0
Add authors_cell_type_-_ontology_labels to `author_cell_type_list` if cell type is also available
#32
anitacaron
closed
1 month ago
0
Remove first empty line in IDF files
#31
anitacaron
closed
1 month ago
0
Add default `author_cell_type_list`
#30
anitacaron
closed
2 months ago
0
Decide what to do when specific obs fields are missing
#29
dosumis
closed
2 months ago
0
Map missing obs fields
#28
dosumis
opened
2 months ago
2
Update bulk script
#27
anitacaron
closed
2 months ago
0
Update pandasaurus_cxg version
#26
anitacaron
closed
2 months ago
0
Validate modified H5AD using cellxgene-schema
#25
anitacaron
opened
2 months ago
0
Convert terms ids to CURIE
#24
anitacaron
closed
2 months ago
0
Add text describing pipeline processing to uns
#23
dosumis
opened
2 months ago
0
Switch Ontology terms ids in h5ad to CURIEs
#22
dosumis
closed
2 months ago
0
Experiments enrichment and bulk process
#21
anitacaron
closed
2 months ago
0
Add citation to `uns`
#20
anitacaron
closed
2 months ago
0
Add default embedding to `uns`
#19
anitacaron
closed
2 months ago
0
Add `assay_ontology_term_id` with EFO mapping
#18
anitacaron
closed
3 months ago
0
Use regex to remove duplicated columns
#17
anitacaron
closed
3 months ago
0
Add title to `uns`
#16
anitacaron
closed
3 months ago
0
Mapping var
#15
anitacaron
closed
3 months ago
0
update CxG converter to support test mode - converting single file
#14
dosumis
closed
2 months ago
3
Roadmap
#13
dosumis
opened
3 months ago
0
Write runner script to convert scxa files to cxg h5ad and rdf
#12
dosumis
closed
1 week ago
5
Specify schema & robot template for adding links to h5ad files.
#11
dosumis
opened
3 months ago
1
Extend CxG validator - to cover multiple species
#10
dosumis
opened
3 months ago
7
Extend CxG conversion to cover - `uns` (general metadata)
#9
dosumis
closed
2 months ago
6
Extend CxG conversion to cover - `obsm` (embedding)
#8
dosumis
closed
2 months ago
2
Extend CxG conversion to cover - `var` (genes),
#7
dosumis
closed
3 months ago
5
Set up OBASK instance with basic config
#6
dosumis
opened
3 months ago
3
Convert scxa h5ad into cxg
#5
anitacaron
closed
4 months ago
1
Specify Schema for mapping genes between species
#4
dosumis
opened
4 months ago
1
API use cases
#3
dosumis
opened
4 months ago
1
EPIC - KG MVP
#2
dosumis
opened
4 months ago
0
Write scxa->cxg h5ad converter - obs only
#1
dosumis
closed
2 months ago
1