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These should both have the prefix "MALDI_" because they describe the "maldiims" schema: https://github.com/hubmapconsortium/ingest-validation-tools/tree/master/docs/maldiims
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Dear all,
I have my raw files in .t2d and had a hard time converting them to mgf or another universal format. I add to do it by hand, basically.
I am worried I've done something wrong because I'…
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**Describe the bug**
I am following the instructions on "Running a FragPipe-equivalent workflow on Linux", here: https://msfragger.nesvilab.org/tutorial_linux.html
I've run my analyses on the exac…
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@mccalluc Look at the metadata.tsvs for MALDI IMS & IMC. None of that text at the bottom belongs there:
https://github.com/hubmapconsortium/ingest-validation-tools/tree/master/docs/maldiims
https:…
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Vanderbilt provided an excel spreadsheet of the required metadata filenames.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/UCLouvain-CBIO/scp
Confirm the following by editi…
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**Submitting author:** @wesleyburr (Wesley Burr)
**Repository:** https://github.com/wesleyburr/subMaldi
**Version:** v1.0.0
**Editor:** @pibion
**Reviewers:** @jspaezp, @sigven
**Managing EiC:** Kris…
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None of the Vanderbilt metadata forms have the metadata_path or data_path fields filled with Globus paths because that data is not in Globus yet. The TBD or other substitute entries in these fields ha…
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I was using crux to analyze MALDI MS/MS data. Strangely, tide-search output has one same value of lnNumDSP for all targets and other same value for all decoy.
Because of which, I am not able to pr…
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I had some thoughts on the `compareSpectra` methdod (that also led to PR #45): I would suggest the `compareSpectra` to use peak matching with e.g. `match.closest` by default before applying the method…