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I don't think this episode introduces very much new content. An option would be to separate out the new content (e.g. "Metrics and Reports") and set up the episode as an extended exercise for learners…
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## Problem
Error when I try to run the pipeline on Sumner:
Check script '/projects/anczukow-lab/splicing_pipeline/splicing-pipelines-nf/main.nf' at line: 261 or see '.nextflow.log' file for mo…
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### Description of the bug
I tried out the [dev branch](/nf-core/fetchngs/tree/dev) and am encountering a wget error in process `NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP`
The underlying error is:
```
w…
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1. Create a TES task, that uses an official Nextflow docker image, OR, uses Ubuntu and downloads and installs and configures Nextflow at startup. Nextflow shall be configured to use TES as a backend…
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**Describe the bug**
When running a job on a system with Singularity, a user ran into an error during the SCE to h5ad conversion.
. I made no adjust for the automounter last week, but it seems to be an issue now.
Even when I atte…
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## Bug report
### Expected behavior and actual behavior
I expected module binaries under `projectDir/resources/usr/bin` to be usable in `projectDir/main.nf` but they arent found.
It is possibl…
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## Bug report
### Expected behavior and actual behavior
I mention both `pull` and `run` because that is how I found the bug, but I confirmed it with just `pull`.
Expected:
Calling `nextflo…
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### Description of the bug
Hello,
a samples.csv that was working in 3.15.1 is not accepted anymore.
The file has numeric sample ids. Prepending them with x makes it work again.
However numeric sample…