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TheJacksonLaboratory
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splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
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Gayathrig
#344
Gayathri-Guduru
opened
1 year ago
0
add other container definitions
#343
laitanawe
opened
1 year ago
0
/usr/bin/env: ‘python2’: No such file or directory
#342
marina-yurieva
opened
1 year ago
0
.command.sh: line 4: rmats.py: command not found
#341
angarb
opened
1 year ago
3
Singularity run fails with docker image alpine based [potential fix: switch to ubuntu based base layer]
#340
cgpu
opened
1 year ago
0
Update dockerfile star
#339
imendes93
closed
1 year ago
0
No space left on /tmp/ dir
#338
imendes93
closed
1 year ago
0
Separate the improvements from the rmats 2 process implementation (rmats2, memory and cpus)
#337
cgpu
opened
1 year ago
0
ImportError: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.29' not found (required by /home/yuriem/.local/lib/python3.9/site-packages/pyBigWig.cpython-39-x86_64-linux-gnu.so)
#336
imendes93
opened
1 year ago
3
Add process to downsample reads before strandedness inference
#335
imendes93
closed
1 year ago
0
Update documentation
#334
imendes93
opened
1 year ago
1
Add singularity_cache in the parameter log to print value on execution
#333
cgpu
closed
1 year ago
0
Update human_test_reps.csv
#332
angarb
closed
1 year ago
0
Update main.pbs
#331
angarb
closed
1 year ago
0
Update changelog to include v2.1
#330
imendes93
closed
1 year ago
0
Update changelog to include v2.1
#329
imendes93
closed
1 year ago
2
Documentation to enable end users to easily execute the pipeline
#328
cgpu
opened
1 year ago
0
Modifies and updates to two step rmats implementation
#327
angarb
opened
1 year ago
0
Update main.pbs [DSL1 as default]
#326
angarb
closed
1 year ago
2
Nextflow Update
#325
angarb
opened
1 year ago
1
Cleanup tags
#324
angarb
opened
1 year ago
0
Update Changelog
#323
angarb
closed
1 year ago
0
Update LU_postprocessing.R
#322
angarb
closed
1 year ago
0
Update documentation to ensure local execution is described in detail
#321
cgpu
opened
1 year ago
1
Implement process to detect strandedness of input RNAseq data
#320
imendes93
opened
1 year ago
3
Update human_test to work outside Sumner
#319
ilevantis
opened
1 year ago
0
Improve documentation for creating input files
#318
ilevantis
opened
1 year ago
0
Update resource parameterisation
#317
ilevantis
closed
1 year ago
0
Updates rmats version from 4.1.1->4.1.2
#316
cgpu
closed
1 year ago
0
Remove network and subnetwork from Google configs
#315
cgpu
closed
1 year ago
2
Add Strandedness Function
#314
angarb
opened
2 years ago
0
Fix Post Processing Output
#313
angarb
opened
2 years ago
1
Update rMATS
#312
angarb
closed
1 year ago
0
Absorb changes from v1.0-fix-rmats-ram to new pipeline version
#311
Vlad-Dembrovskyi
opened
2 years ago
0
Fix pipeline reproducibility issue with rMATS
#310
Vlad-Dembrovskyi
opened
2 years ago
0
Post Processing Bug
#309
angarb
closed
1 year ago
3
Add ci test nextflow run commands in the README file to be able to share the pipeline execution details
#308
cgpu
opened
2 years ago
0
Replace occurences of hardcoded directory under anczukow-lab
#307
cgpu
opened
2 years ago
0
Gen3-DRS files not found in manifest not being saved into a log file
#306
imendes93
opened
2 years ago
0
Change GLS executor from parameter to scope
#305
imendes93
closed
2 years ago
1
Dev v2.1 #287 - Simplify the Gen3-DRS download option
#304
imendes93
closed
2 years ago
2
Change GLS executor from parameter to scope
#303
imendes93
closed
2 years ago
0
Required cpus too high?
#302
angarb
closed
1 year ago
3
Remove network and subnetwork definition for Google Life Sciences from all configs
#301
cgpu
closed
1 year ago
3
Dev v2.1 #287
#300
Vlad-Dembrovskyi
closed
2 years ago
0
Remove gtex
#299
Vlad-Dembrovskyi
closed
2 years ago
0
Update gen3 documentation for new manifest file
#298
Vlad-Dembrovskyi
closed
2 years ago
1
Comments our fasta requirement for gen3-drs input
#297
Vlad-Dembrovskyi
closed
2 years ago
0
Changes gtex input to support new manifest file format [#289]
#296
Vlad-Dembrovskyi
closed
2 years ago
0
Pipeline release v2.1
#295
Vlad-Dembrovskyi
closed
2 years ago
0
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