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Hi, in the Readme page, you mentioned the GUI file OpenSeachKDE.jar. However, I didn't find it in the releases page. Where can I find it? Thank you so much.
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Hi,
I searched through the issues and didn't find anyone else requesting information on this issue, I apologize if I missed one.
I'm using OpenMS (via pyOpenMS) to deisotope .mzXML files. We not…
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This is a request from a Crux user. If a spectrum has no charge state specified or has a charge state of 0, then tide-search should search the spectrum in all possible charge states, ranging from min-…
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Dear Lutz
If I understood correctly, in the default setting, the following line defines the search for BS3amidated linear peptide
modification:linear::SYMBOLEXT:bs3nh;MODIFIED:K,S,T,Y;DELTAMASS:…
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I am applying SILAC modifications to a spectral library using these options:
--fixed-mod SILAC,0.0,KR,label
--lib-fixed-mod SILAC
--channels SILAC,L,KR,0:0; SILAC,H,KR,8.014199:10.008269
--or…
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```
Eric posted this to the PSI-PI list, so copied here for tracking:
By way of background, we at ISB have been testing to the ProteoWizard idconvert
tool to convert our TPP output (pepXML & protXML…
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Hello,
I used MS-GF+ on the mzML file, using the .faa file as reference, and produce the .mzid file. All files are in the following link: https://figshare.com/s/b65fc594da19f0f9347f . The raw dat…
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Hey,
I am very eager to try out the newest casanovo version on some of our data. While the test MGF file works just fine, I keep running into the same error on our Orbitrap data (after MGF and mzML…
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It would be great if Percolator PSM-level tab-delimited output files could be supported by FlashLFQ. I looked into this, and there are two major and several minor challenges associated with making th…
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I ran an MS-GF+(v2017.01.13) search using SearchGUI, and received the following errors when the output files were being generated:
Writing results...
java.lang.NullPointerException
at edu.ucsd.m…