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(RFAA1) [2200012187@hr-6-6-login RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein
/gpfs/share/home/2200012187/mambaforge/envs/RFAA1/lib/python3.10/site-packages/hydra/_inter…
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Running our protein-prep CLI on a supported target but using a PDB structure file directly from RCSB results in a failure see the following example:
```bash
wget https://files.rcsb.org/download/5SQ…
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Hi Fengchao,
This is not really a request, but just more out of question. Are there any plans for additional support for using the PEFF format information in outputs for FragPipe? I am toying around …
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Proteins with massive chains can take up to 30 seconds to process one command. Adding a window to blobulate can reduce processing time while also blobulating only relevant sections.
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Thank you for the amazing contribution of DIANN. I am picking up on the recent release of diaTracer through FragPipe and am working off of their included peptidomics workflow that builds a single libr…
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@sujeetvkulkarni In the component section for a lot of biomarkers there is no component being shown even though it has components and information in there. It seems that it is using the GlyGen structu…
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Hello, thanks for your development of this tool! I was curious of your thoughts on using it on meta-omic datasets which comprise genetic information (e.g. metatranscriptomics, gene-level metagenomics)…
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I found an issue with the EC numbers on the protein pages and I have some suggestions for changes to how the EC numbers are displayed on the front end that we could discuss during the general meeting:…
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When a gene product has a paralog,
we need some way of linking the orthologs
Implement count column for orthologs and paralogs
Example
YJR066W matches both Tor1 and Tor2
But you don't know …
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