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* **PTHR ID & PTN node:**
GO:0003712 | transcription coregulator activity | IEA with PTHR10782:SF97 | GO_REF:0000118
GO:0006357 | regulation of transcription by RNA polymerase II | IEA with PT…
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Greetings,
I am trying to map annotations made by Roary (so really annotations of CDS made by prodigal, and that's why I am asking on this page) back to a gene name for use in Gene Ontology Analysi…
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Thanks for the tool it sounds very useful! I want to use it to annotate the viruses I find in my metagenomes but I have a few questions concerning the use of the tool:
1) In the literature (example…
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Please provide as much information as you can:
* **GO term ID and Label**
trehalose biosynthesis in response to heat stress (GO:0090441)
* **Reason for deprecation** Put an x in the appropriat…
sjm41 updated
3 weeks ago
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Adjust score to reflect the adjacency of two proteins connected by an edge (in some cases we connect two proteins that are actually linked via one or more intermediary proteins). See David's annotatio…
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This ticket is meant as a reference point to summarise concerns about protein dimerization activity + protein oligomerization terms, and to collect links to previous discussions and proposals. Hopeful…
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Need to implement a list init api which takes a table id as input and returns list of columns supported by the table.
The response needs to contain id, name, classification/category.
**Would lik…
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New curation type "protein localization dependency"
This is a slightly odd one. We would like to have an annotation type "protein localization dependency"
This would be identical to the phenotype a…
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Hello,
I run bamquery
```python
!python xxx/Software/bamquery/BamQuery/BamQuery.py xxx/Software/bamquery/BamQuery try_1 v38_104 --mode normal --t 8 --plots
```
And my output is as follows,
`…
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Hi,
First of all, we want to thank you for this wonderful application. It has streamlined our variant annotation workflow tremendously.
We submitted the HG19 chr16-11349332-CC-TT variant to Ope…