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HI,
I am working on a hybrid assembly for a 3.2G allotetraploid plant genome:
1. Illumina assembly with [w2rap-contigger](https://github.com/bioinfologics/w2rap-contigger).
2. [DBG2OLC](https:/…
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STAR already provides an awesome function for generating a transcriptome alignment for downstream tools such as RSEM, Salmon via `--quantMode TranscriptomeSAM`. As far as I understand, the alignment i…
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A prior dependency package for the tool exists in the MTS. But conda is also available.
Once created, consider reopening this ticket for review (add tool to http://usegalaxy.org): See: https://git…
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Hi,
I am running 20 paired-end RNA-seq samples since yesterday (more than 24 hours over) and only 7 samples have been completed (others are still running) on 16 GB RAM computer.
Any way to make it …
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For purposes of anonymization I need to rename the cell-names which include the study number in our dataset.
I have a Seurat-object with `test@assays$RNA$counts@Dimnames[2])` and `test@assays$SCT$…
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Hi all,
I have sequencing data from the ONT PromethION platform with the Kit SQK-RNA002 and R9 chemistry.
Tombo pipeline has been launched under the conda environment with the following version of…
vgori updated
10 months ago
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I'm copying this here from #1117, since it outgrew that list.
## Basics
galaxyproject.eu provides the middle panes for all the *.usegalaxy.eu servers.
Each of the `index-*.md` files in the ro…
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Hi!
I am trying to map my snRNAseq data to Hypomap, but when I run either `predict_query ` or `map_new_seurat_hypoMap`, I got the following error message:
```
Normalizing data
Matrix for annda…
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@scheibelp -- Follow up to https://github.com/spack/spack/pull/12940
Some of the packages (at least one, but I'm trying to figure out which) point to a private GitHub repo which causes a the comman…
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We have a two sets `[A x B]` and `[C x D]` of F0 animals which were short read sequenced. The F0 ([A x B] and [C x D] )were repeatedly mated to give `F1` `[AB]` and `[CD]`. The F1 were then mated to…