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https://mp.weixin.qq.com/s/CBdljX2zfSoz-VZIWbcoRw
ixxmu updated
4 months ago
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Hi,
I wanted to incorporate RNA velocity into PAGA. I see that the example posted in Issue #11 has been removed. Would you be able to post the example again to show how to obtain spliced/unspliced co…
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I tried to run RNA velocity by following the tutorial of RNA velocity basics with following link
https://scvelo.readthedocs.io/en/latest/VelocityBasics.html#
I follow the code exactly based on t…
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RNA velocity analysis consists of two steps:
1) Applying “kb count” to FASTQ files
2) Applying scvelo to the .h5ad file(s) obtained from 1).
Question: does one have to enforce consistency b…
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I have been going through the documentation on scMTNI. Currently, I am working on a project that requires me to study the cell states in the dentate gyrus.
However, I don't know how one would calc…
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Hi everyone,
I am trying to create a Seurat object that contains the information spread across two Seurat objects. The tewo seurat object have matching cell IDs but in different order.
My two ob…
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[GROMACS tutorial](http://www.mdtutorials.com/gmx/complex/01_pdb2gmx.html )
[GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design](https://doi.org/10.1021/acs.jcim.2c0004…
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Hello, I am attempting to perform RNA velocity on a blood sample previously run through cellranger and velocyto (so scVelo's input was a loom file). After attempting to follow the standard vignett…
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https://mp.weixin.qq.com/s/H1MfzvsK-HH7OeBAQ6aZBg
ixxmu updated
3 weeks ago
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Hi,
After running latent_adata = ltv.output_results(model, adata), I could only get an adata of 20 dimensions, which equals to the latent_dim that I set in initializing the model. I'm wondering if …