-
There may be a BA.2.3.2 sublineage with ORF1a:K798N (nucleotide G2659T) and ORF1b:A88V (aka ORF1ab:A4489V, nucleotide 13730T) observed in the Northern Mariana Islands, Hawaii, the mainland USA, and Ca…
-
I noticed that nextclade works if I only give the S gene sequence as input instead of the full genome. The nextclade.tsv file does not show any errors as far as I can see and I get a clade classificat…
gbbio updated
2 years ago
-
Currently PR has orf9b, but does not have the SARS-CoV-2 orf9c.
See:
[severe acute respiratory syndrome coronavirus 2 protein]
http://purl.obolibrary.org/obo/PR_000050262
In Ontobee: https://www…
-
### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [x] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
-
Currently, the covid_to_observation only captures what sample was taken and that it was positive or negative.
> Observation concept id = Nasal fluid sample specimen concept
> value = positive
> da…
-
Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
-
- [x] Convert to JSON
- [x] Create any new sources ([UCUM](https://app.staging.openconceptlab.org/#/orgs/Regenstrief/sources/UCUM/))
### Staging
- [x] Bulk import
- [x] Create diff
- [x] Retire…
-
### Story
_Data consumers can filter by curated metadata to find datasets in the portal._
With the exception of `development stages`, this requires no knowledge of the ontology in the implementatio…
-
When update the SONG metadata, the current SONG in Cancogen has a bug to populate the correct values in the fields:
`firstPublishedAt`, `publishedAt `, `analysisStateHistory`
Example:
https://son…
-
We recurated the uniprot goa GPI for sars-cov-2 for another project, we should use this one in Neo
https://github.com/Knowledge-Graph-Hub/kg-covid-19/blob/master/curated/ORFs/uniprot_sars-cov-2.gpi
…