-
Hi,
I've recently begun to use to the --fixed-event-argument, but I don't get how it works. Let's say I have four groups: A and B from dataset 1 and C and D from dataset 2. The idea is that I want to…
-
For bulk-RNA analysis I propose the following approach.
If de novo editing sites want to be called:
1) Run pileup on a bam file (`get_pileup()`) to detect variants above certain read depth thresh…
-
Hello,
I am trying to run IRFinder and run into this issue:
`IRFinderBAM: line 163: 3028 Segmentation fault (core dumped) ${LIBEXEC}/irfinder ${OUTPUTDIR} ${REF}/IRFinder/ref-cover.bed ${RE…
-
I know CIRI2 will filter reads by PEM signals. But i am confused about if the inner distance of ciricular RNA reads is low, will CIRI2 filter this reads by PEM signals.
-
https://mp.weixin.qq.com/s/i0Due-eMqa8mrSn5izuQXw
-
Dear Woody,
I am running ONT long-read data, and getting the "Attempt to reload PDL/GSL/CDF.pm aborted." error, also Segmentation fault (core dumped).
All modules seem to be uploaded, previous…
-
Hi,
Firstly, thank you for making rMATS available to our community. I have found it useful, well-documented and easy to run. I was hoping you could assist with a query I have regarding interpreti…
-
* spladder version: 2.4.4
* Python version: 3.6.15
* Operating System: linux-64, anaconda environment
### Description
Hi, I try to use spladder for alternative splicing events detection from p…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/alexchwong/SpliceWiz
Confirm the following by edi…
-
* spladder version: 2.4.4
* Python version:python/3.6.6
* Operating System: Unix
### Description
I've run the build and test commands for wildtype and mutant samples and receive an error durin…