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Hi,
We have encountered an error when processing the Ting et al. dataset through SAKE.
Here are the parameters that we used:
- Dataset: [GSE51372](https://github.com/naikai/sake/blob/master/inst/…
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Dear @smorabit,
Thanks a lot for all your help with my questions regarding hdWGCNA.
I was wondering if you have any advice on how to get fewer, but more specific modules.
Many thanks,
Paria
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I tried to concatenate two heatmaps vertically, but I received this error. I have attached my session info.
> ht_list = ht1 %v% ht2 %v% ht3
Error in UseMethod("get.vertex.attribute") :
no appl…
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Hi,
I would like to download TCGA SARC data from GDC by TCGAbiolinks package.I wrote below code for that pupose:
```
query
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When doing the 3vs8 analysis with default settings, getting the following error:
```
.Quitting from lines 458-473 (atacseeker.Rmd)
�Error in mcfork() :
unable to fork, possible reason: Cannot al…
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I'm running the basic hdWGCNA pipeline using a set of large Seurat 5 objects that were generated using BP Cells to allow storage of large expression matrices on disk rather than in memory.
When ru…
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Hi I am trying to run findModules(), but I keep getting this error. Have tried to change parameters with
pyWGCNA_adata.findModules(kwargs_function={'cutreeHybrid': {'deepSplit': 0, 'pamRespectsDen…
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https://mp.weixin.qq.com/s/cWV_ziCQCU3fzRouyWMbCQ
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#for root samples
root_bac_sub_no_bad_Filtered_final_non_normalized 0.0001, TRUE)
root_network
#first convert to microtable
root_amp
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## Context
https://arxiv.org/pdf/2209.00693.pdf
## Question
Can we use "A large dataset of software mentions in the biomedical literature"