naikai sake issues - Githubissues

naikai / sake

sake

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No. of expressed genes failed to plot for k>2

#84 savytskanatalia opened 1 year ago
0
Hardcoded outdated Biomart database?

#83 savytskanatalia opened 1 year ago
0
List of all required package versions for sake to fully function

#82 nickhir closed 1 year ago
2
Error when running SAKE on Ting et al dataset

#81 olivertam opened 3 years ago
5
Issues with updated shiny?

#80 naikai closed 3 years ago
1
Problem with input files

#79 gspirito closed 3 years ago
8
t-SNE errors when running sake with more than 1 cpu core

#78 psterk opened 4 years ago
2
set jquery version in global.R

#77 psterk closed 4 years ago
1
Packrat Installation/Download Link Broken

#76 ColeWunderlich closed 4 years ago
1
Failed to install 'sake' from github: Not found

#75 raquelgarza closed 4 years ago
6
add new file to test

#74 naikai closed 3 years ago
0
failed to download of NMF results and NMF plot

#73 zhuxqdoctor opened 5 years ago
1
download

#72 zhuxqdoctor closed 5 years ago
0
errors in stalling sake

#71 helianthuszhu closed 5 years ago
3
Errors in installing sake pacakge

#70 Yoon-Seob-Kim closed 6 years ago
4
Installing on mac high sierra

#69 bharris12 closed 6 years ago
1
Cancer Genomics Cloud

#68 molikd opened 7 years ago
0
AWS EBS to AWS S3 to AWS Glacier Integrations for public sake

#67 molikd opened 7 years ago
1
Remote Storage

#66 molikd opened 7 years ago
0
User storage credentials in LDAP or Active Directory for the private version of SAKE, and in AWS Directory Service for the public version SAKE

#65 molikd opened 7 years ago
0
Test Elastic beanstalk for viability with sake

#64 molikd opened 7 years ago
0
Scaling and Deployment on Sake Servers

#63 molikd opened 7 years ago
1
Continous Integration

#62 molikd opened 7 years ago
0
Box plot gives wrong information in NMF_features

#61 naikai closed 7 years ago
1
t-SNE will break when using “manually selected genes”

#60 naikai opened 7 years ago
0
Error's installing on Ubutnu 16.10

#59 molikd closed 7 years ago
3
Added Ubuntu libraries in README

#58 molikd closed 7 years ago
0
Package installation

#57 naikai closed 7 years ago
0
Feature selections, training, and prediction through CNN

#56 naikai opened 7 years ago
0
Generic Computational cloud backend for NMF

#55 molikd opened 7 years ago
4
Add option to reorder the sample grouping

#54 naikai closed 7 years ago
1
PCA and t-SNE plots cannot be downloaded

#53 naikai closed 7 years ago
0
t-SNE plot is off for rdata loaded from previous NMF run

#52 naikai closed 7 years ago
1
coloring for PCA and t-SNE seems to be off when we run normalization or transformation

#51 naikai closed 7 years ago
1
fixing the perplexity warning in t-SNE

#50 taicher closed 8 years ago
0
fix the t-SNE perplexity issue

#49 taicher closed 8 years ago
0
t-SNE will replot when you change perplexity before hitting 'run-tSNE'

#48 naikai closed 8 years ago
1
Edits to NMF and I added a .png of the NMF figures

#47 taicher closed 8 years ago
0
visualization revisions - options for heatmap

#46 taicher closed 8 years ago
0
I am mostly done - I still have to finish the heatmap parameter section.

#45 taicher closed 8 years ago
0
filter vignette edits

#44 taicher closed 8 years ago
0
Organize heatmap based on NMF

#43 taicher closed 8 years ago
1
Put filter option in the Data Metrics tab

#42 naikai closed 7 years ago
1
Changes to organization of data_metrics vignettes

#41 taicher closed 8 years ago
0
testing

#40 taicher closed 8 years ago
0
Download heatmap failed when using original row order

#39 naikai closed 7 years ago
1
Add option to color sample by correlation to known cell-types

#38 naikai opened 8 years ago
0
Distribution of gene expression for each NMF group

#37 naikai closed 7 years ago
1
changed to .4!

#36 taicher closed 8 years ago
0
Update README.md

#35 taicher closed 8 years ago
0