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Hi,
I am using bowtie 2.3.5.1 and try to get sample and other IDs recorded on the `@RG` line. Unfortunately, it seems bowtie2 does not write TABs as separators on the `@RG` line and also copies who…
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> library(ape)
> library(dendextend)
> tree1 is.rooted(tree1)
> tree2 is.rooted(tree2)
> den1 den2 tanglegram(den1,den2)
output:
Error in if (new_labels_length < leaves_length) { :
arg…
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Dear Aurelien, Attila,
Excellent bioinfo tool, congratulations!
I have two questions concerning to the metabolite annotation in the PKN
1/ Looking the full PKN network, I have realized that m…
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Hi,I am new to this research . I am asking a question for my understanding.
I was looking at the features you mentioned in the "features derived from sequence data".
Can I see the orientation in wh…
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Hi, thank you for developing Control-freec.
When I was running the gccount program, I encountered the following error message:
> Unable to open fasta file for chr 248956422 in folder /home/user/re…
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Hi! I'm a research assistant from the University of Michigan bioinfo lab. Since our lab also focuses on sequence-based predictive models, I'd like to replicate some analyses, specifically Enhancer Kno…
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Love MLST and all tseemann related products.
Is there a way to output the allele sequence (in fasta format) that was used for final matching and calling of ST?. A flag to output the allele seque…
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#### Current behavior:
Suspected duplicated metabolites from MetaNetX:
reference ID|met ID|affected rxns| Action for mets|Action for rxns|Comments|
|-----------------|-----------------|------…
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Hi, I tried to build the ICEfinder container today, but ran into the following errors:
1) I had to remove the first line from icefinder-v1.0-local.def (although the ICEfinder_linux.tar.gz exists)
`W…
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first
/lustre/work/shufan/RD/Software/bcftools/bcftools-1.9/bcftools filter -o /mnt/rorke/work/shufan/Test/NeoAntigen/DNA/19705CS/Nomatch/mid/591097_tumor.filter.vcf -m x -e **'INFO/EAS_AF>0.001 || …