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Hi Guys
I'd like to be able to take a Harvest core genome MSA + the non-core bits that were cut out, and make a partial order alignment. i.e. I'd like something like
block {a,b,c} block {d,e,f} block…
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When running the latest version 8.1.0, the first line of logs is an error message - possibly can be ignored but unclear to end users:
```txt
ERROR StatusLogger Log4j2 could not find a logging impl…
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Dear fusion catchers,
While building the indexes for fusion catcher we stumbled upon an issue that may be derived from a change in the FTP structure that break some assumptions.
When the organ…
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Hi velocyto team,
I ran 10x cell ranger count output files with the following commend. But no loom. file that supposed to be generated.
velocyto run10x /project/wilsonp/linda/319-5_prime /projec…
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I'm trying to use parsnp to infer core genes (and importantly, get rid of signal introduced by recombination in core genes) on around 1000 bins retrieved from metagenomes. The problem is that parsnp t…
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Hi,
We have tried helixer on the Cupressus sempervirens genome assembly
https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_028749045.1/
but obtained poor busco results on the 38652 called transcrip…
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### Description of the bug
Hello.
I am trying to use viralrecon as to detect variants with a minimun frequency of 0.1. Nevertheless, when using viralrecon with the instructions given below, I have …
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### Description of the bug
While running RNAvar pipeline and providing the reference as a GTF file, the following error was seen:
EXITING because of FATAL ERROR: Genome version: 20201 is INCOMPATIBL…
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Nextflow command:
```
nextflow run nf-core/sarek -profile docker --input samplesheet.csv --outdir sarek-chop-output
```
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Funny little minor glitch. I think it's using the counter for "genomes passing animo acid filter" instead of the total. This leads to fun warnings like:
`[2024-04-25 14:25:09] WARNING: 2 of 1 genomes…