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Now I am analyzing the footprints of some TFs, however, I got the error of 'Error in stop_if_wrong_length("'seqnames'", ans_len) :
'seqnames' must have the length of the object to construct (1) or…
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### Description of feature
- Show the TE library input
- STAR should have input from the genome
- BAM input should join after STAR
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We have encountered an issue related to the use of GTF and FASTA files during our analysis. The official examples provided in your documentation use gencode.v26lift37.annotation.gtf.gz and ucsc.hg19.f…
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Hello,
I have implemented RNA-Bloom on a subset of the PacBio bulk transcriptomic data and achieved the expected results. However, I noticed that some steps in RNA-Bloom take a considerable amount …
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Good afternoon,
I am assembling fish genomes de novo using hifi data and have run into a few issues for a few of my target species (all diploid);
first, to better understand the size and heterozyg…
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### System information
- Ubuntu 22.04
- 1.0.5
- Cloud
### Description of the Issue
The `format` command with `--generate-metadata` crashes for a filename that doesn't contain `GCST`, even if the …
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Hi,
I have a problem doing genome indexing with STAR. Is there any solution for this:
Oct 22 00:53:51 ..... started STAR run
Oct 22 00:53:51 ... starting to generate Genome files
Oct 22 00:55:2…
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Below, instead of talking about cM/Mb of ibd sharing between brothers, I try to calculate % of genome sharing. Firstly, I am not sure I am doing it correctly? Secondly, can this be made, e.g. with `un…
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Sometimes one needs to analyze data that has been aligned against an old genome assembly. As far as I can see, there is no explicit direction in the documentation as to how the workflow should be modi…
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tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3679e_b2fd50.json?f_userOr…