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**Describe the issue**
I'm experiencing issues when running the LTR clustering step of repeat modeller.
**Reproduction steps**
Here is the relevant fragment of the job script.
```
db=$1
…
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Thank you for developing such a useful program. This is my first time running RepeatModeler and I'm still working out how to use it to the fullest extent. I'm really glad that you have the "-recoverDi…
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Hi,
I tried using `--genome` in PLINK to calculate IBD based on a selection of SNPs (in my case 44). Turns out, that in my data:
- 7 SNPs have haploid genotypes
- when merging GWAS data of the sa…
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Hi,
I am processing a PromethION run with 191mil reads. The first pass of the pipeline processes close to 160mil reads (not a big drop). However, the second pass processes only 4mil reads. I am not s…
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> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
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Running the Pipeline-16S using the following command, nextflow run, but instead of producing the output we expected according with the information in the webpage, it produced several subdirectories th…
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- [ ] Read the papers
- [ ] Send an email to the writers of the paper
- [ ] search in google scholar more papers on the subject.
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Hello!
I'm new in the field and I need to use Chewbbaca In the end of the analysis, I get in a visualization folder, a file, cgMLST.tsv. Is the values in this file represent the allele distance of e…
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Hi,
I was trying to use IsoPhase do call SNPs from the Pacbio Isoseq data for a single sample. However, when I run the `select_loci_to_phase.py `with all the files required, I was keeping getting 0…
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Despite having a number of events (**DEL**, **BND**, **DUP**, **INS**) spread out across all chromosome in _C. elegans_ (**I**, **II**, **III**, **IV**, **V**, **X**, **MtDNA**) I only see illustratio…