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> AssertionError: Annotation file '/vision2/u/zhuoyih/projects/moma_scene_graph/TRACE/data/ag/annotations/detections_train.json' not found
Hi, I got this error while I was trying to train on the ac…
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I feel like this type of method would work as a fantastic competitor to bacterial whole genome alignment software such as Mauv/progressiveMauve. Have you tried validating this software with bacterial …
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Hi !
Do you think there is a possiblity to choose the order in which the genomic regions are plotted ? Like for example in the order in which they are selected ?
In the screenshot below, you c…
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Hi @Kinggerm, I am trying to assemble the mitochondrial genome using get organelle tool but I am keep getting this error of No valid assembly graph found. I looked in the issues section and implemente…
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Hi all,
I am trying to do genotyping (DNAseq samples) and allele specific expression (RNAseq samples) of a recently assembled plant (alfalfa (Medicago sativa L.)), [nature paper here](https://www.n…
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[This paper](http://link.springer.com/chapter/10.1007%2F978-3-662-48221-6_16) describes a a colored de-Bruijn graph representation for "pan-genome storage".
@christinaboucher said they can't handle t…
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Here is a strange case of a missing gnomAD variant, 17-41228120-T-C. It appears in the gnomAD browser (https://gnomad.broadinstitute.org/variant/17-41228120-T-C?dataset=gnomad_r2_1_non_cancer), but n…
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Hello sir, happy new year and a request from my side to avail a pretrained model for action genome. So that I can use the pretrain model to predict the graph from the video for my further research wor…
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Given a circular reference genome for a prokaryote like E.coli, I don't think we should ever have dummy nodes, but given the way we generate the kmers, we might. This is more of a practical considera…
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Is it possible to use GSAlign to align multiple genomes with each other? Say by concatenating the genomes and using the same file as the reference file and the query file? I know in your paper you rul…