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Hi, thanks for the great approach!
I am confused about the preparation of the input file for MR-JTI, I want to know how to make sure that exposure (eQTL in cis regions) and GWAS traits (QTL) use the …
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Hi Everyone,
this is a question rather than an issue;
Can one conduct a meta-analysis of MTAG outputs? Is this viable, or it would be like double-counting (as the SNPs put forward in the met…
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After summary statistics of BMI being restricted to hm3 SNPs with LDHub filtering procedure, LOGODetect will produce error as showed in the figure. And I'd really appreciate it if you have any suggest…
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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…
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just got this running
Note that
Polyfun susie does not get to run as it is missing the environment
Also note the software is installed
## Code
```
columnsnames = echodata::construct_col…
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Hi
When running MTAG between two traits, I complete munging the first GWAS, but after that I get the A10 error below. It does not depend on the order of traits entered. What could I do here?
Thank…
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Proteomics:
- [x] Send demonstration for SPPCA @austinTalbot7241993
- [ ] (stretch) Follow Eric Dammer's pipeline @akotlar
- [ ] (stretch) Replace Eric Dammer's network analysis with SPPCA and compa…
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It seems the main function only returns an estimated LD matrix at this point?
https://github.com/stephenslab/LDshrink/blob/32b4ad3942f7cb429f23c529b86ab72cfbb1b257/R/LDshrink.R#L6
Ideally we want …
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Dear Zikun
CARMA is becoming a fundamental tool in our genomic analyses at our lab, and I really want to thank you for both the software and the support procided via this wiki. We are planning on con…
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Hi, I am new here.
when i tried to run my data I encounter this issue everytime.
ERROR converting summary statistics:
Traceback (most recent call last):
File "./munge_sumstats.py", line 61…