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Hi, I got the following error when creating the wheat genome index
```
Build index for the reference.
Kmer length: 17, window size: 7
Reference file: 161010_Chinese_Spring_v1.0_pseudomolecules.f…
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Hi, I am recently mapping the transcriptome on large genome size with about 25G.
I have run the following code successfully, but get the empty indexing files: sjdbList.fromGTF.out.tab and sjdbList.o…
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I submitted this issue previously [here](https://github.com/schatzlab/genomescope/issues/126) and am following up.
I have now performed kmer counts using Meryl on ccs output from my PacBio HiFi ru…
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After comparing two genomes to obtain a large number of unique k-mers, how to quickly find the position of k-mers on the genome? Currently, I use software such as `bwa` and `fuzznucl`, but I feel it i…
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I think this issue is related to something that has been mentioned previously here, but I'm not sure that it is resolved.
I am using GSalign to align and call variants from a series of assembled ge…
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Hi people,
I hope this is the right place to ask my question. If not, than please let me know an alternative. :)
I am kind of new in the world of whole genome alignments. I wanted to create a s…
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Hi, I am assembling a plant genome with PECAT. Since the genome is large and the assembly process takes up too much memory, I directly ran the step of "Assemble" instead of "Correct". However, I found…
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**Hi Hannes,**
**I encountered a BUG when using GraphTyper2 to genotype SV in the wheat genome. The wheat genome is about 15Gb. If the genome size is too large (more than about 4.3Gb), some chromos…
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I have multiple files from delly for preprocessing of WGS data which would not finish after more than a week. I found that the specific region is a large poly G stretch of at least 70nt around chromo…
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I have been trying racon out on a plant genome assembled by miniasm (raw pacbio reads), the assembled genome size is 547 Mbp (expected size 750Mbp) and the .paf file is 300Gb. I have tried giving upto…