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The correlation apps aren't appropriate for all studies. We'd like to hide them in the New Visualization Picker page, just like we do for maps.
To do this, it looks like we'll need two new annotat…
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- [ ] Check accessibility
- [ ] Check pedagogy
- [ ] Check grammar
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### Description of bug
I am running metaSPADES on a co-assembly of 6 samples totalling 19gb raw reads given to metaSPADES. Despite this being a somewhat typical size of metagenomic dataset I get out …
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Hi, I was trying to make the timecourse figure using following command:
`$ python plot_timecourse.py argR.settings.txt`
But seems like some file named 'haplotype_timecourse.txt' is missing in da…
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https://spaam-community.slack.com/archives/C0183TC8B0R/p1667987904955569
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I'd really like to use sourmash for metagenomic classification as in portik et al. I have been trying it out on small datasets and I've noticed that the gather step in particular seems to take a long …
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I was thinking about adding [Integrative pathway enrichment analysis of multivariate omics data](https://doi.org/10.1038/s41467-019-13983-9) by Paczkowska et al from the recent PCAWG release.
> 202…
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Hi, thanks for providing such a good tool.
I noticed that in the Guidelines, bacphlip can predict only **complete** phage. However, as you know, in the metagenomic data, the assembled contigs maybe…
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Hi,
can we use Decontam package for whole genome microbiome data? how?
my data doesn't categorize in OTUs or ASVs.
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I'm wondering what would be the most appropriate method to go about using Brownie on paired-reads from metagenomic samples? I would like to use both the forward and the reverse reads for long-read err…