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SIGNOR is a repository of manually annotated causal relationships between human proteins, chemicals of biological relevance, stimuli and phenotypes. The search field below allows users to access the e…
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I'm looking for a faster alternative to Diamond for aligning proteins to UniRef50 so I can map identifiers to de novo proteins.
Can I use this tool to accomplish this task?
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I'm trying to cluster a set of ~500 conformations of the same protein but no matter what I try I only get 1 cluster.
Do I need to do something to the set of structures before clustering them?
I'…
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Need to make multiple protein items?
https://mygene.info/v3/gene/38418
https://mygene.info/v3/gene/856015
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hi,
when I run the command `./CAT_pack/CAT contigs -c "/home/jiaojiao/cat/test.fasta" -d /home/jiaojiao/cat/CAT_prepare_20210107/2021-01-07_CAT_database/ -t /home/jiaojiao/cat/CAT_prepare_20210107/20…
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# Scenario 6: Regnets for gene expression and regulation
A fundamental theory in molecular biology, known as the ‘the central dogma’, describes gene expression as the flow of information from DNA t…
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Running on PDB ID 1UNC of Villin https://www.rcsb.org/structure/1unc causes the following crash
The issue is that the residue is named GLU but it has a HE2 hydrogen which corresponds to a GLH residue…
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Hello,
First of all again, many thanks for developing this great tool. I open this issue because I wanted to know which probability cutoff is recomended, in your opinion, as a minimum to trust a 3…
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@sgibb @lgatto : I have a conceptual question: the `Proteins` object requires unique `seqnames` and names of the `pranges`. Was there any specific reason for that?
I'm asking because `GRanges` or `GRa…
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Hello,
How do you decide whether you want to work with one unique peptide or multiple peptides? I searched the DIA-NN output matrices and found the "proteotypic" column, which provides information…