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Hello,
I keep running into the following error when I try to run the ctx command after completing the GRNboost step.
Most recently I encountered this issue using the following two files as f_db…
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Hi,
Thanks for developing scenicplus.
I am at the last part of the tutorial which is
```
from scenicplus.wrappers.run_scenicplus import run_scenicplus
try:
run_scenicplus(
s…
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Hi there,
I've been using dorothea to estimate TF activity, but since CollecTRI has a bigger coverage I was wondering if I could estimate the TF activity with this database too. I read in the pape…
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https://mp.weixin.qq.com/s/DgifZl6Pk8eSrRsbNFVxYA
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Hi, I wanted to try to obtain the regulons with collectri(). Though it doesn't seem to work for me.
`Error in collectri() : could not find function "collectri"` when I first load OmnipathR and the…
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https://mp.weixin.qq.com/s/k32-ZVZr3QhHMtO-TWXGIA
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Hi Guys,
Great tool! Thanks for taking the time and effort to develop it. I just ran SCENIC on my dataset, but I can't seem to visualize it in SCope. The regulons or showing up and I can export to …
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Dear MINI-EX developers @SvitlanaLukicheva @gabimadrid,
I encountered a new issue, as shown below in the file .nextflow.log. The last error message have been repeating for several hours and it seem…
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https://mp.weixin.qq.com/s/5rZ5yLXaLDVAtQbtGHAHoQ
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I'm running into an error when trying to run the "run_viper" command below.
`run_viper(deg_t, dorothea_hs, tidy=T, options = list(minsize = 5, eset.filter = FALSE, cores = 1, verbose = TRUE, nes = …