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Running the latest run_finder-v1.1.0.
Everything runs fine until the codan step (Braker is complete), which finds a duplicate key and kills the pipeline.
Looking at the assemblies_psiclass_modified/…
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Hello, I have installed clinker with conda create -n clinker -c conda-forge -c bioconda clinker-py
I have try to update to v0.0.28 because I have some errors when I want to compare some genomes:
but…
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---
Author Name: **brian li** (brian li)
Original Redmine Issue: 2823, https://redmine.open-bio.org/issues/2823
Original Date: 2009-05-04
Original Assignee: Bioperl Guts
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Platform:
BioPerl 1.6.0…
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Hello,
I use `khmer` in `primerForge` to retrieve kmers that appear exactly once in the genome My current workflow is this:
```python
from khmer import Countgraph
def getKmersThatAppearOnce(…
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When I tried to use the SeqVec pipeline of the webserver with the seqence-protein example, I got an exception in the umap part:
```
[2020-12-30 15:52:28,294: INFO/MainProcess] Received task: webse…
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Hello, running Roary/1.13.0
we have a problem running roary, it stops with the following error message:
```
Iteratively run cd-hit
Cant open file: _clustered.clstrParallel all against all blast
…
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### Setup
I am reporting a problem with Biopython version 1.76, Python version 3.7.7, and operating system as follows:
```
3.7.7 (default, Apr 15 2020, 05:09:04) [MSC v.1916 64 bit (AMD64)]
CP…
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Hi, I am running CAT to annotate contigs from metagenomes that are known to be E. coli by several other approaches. For example, greater than 99% average nucleotide identity with reference E. coli ge…
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As I've been working on #549 to add support for SARS-CoV-2 references, I've had some trouble with running out of memory. I think it's partly that I'm running on equipment with less memory than I usual…
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After migrating from [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to calculate embeddings directly in biotrainer for the provided sequences, it is now theoretically possible to allow…