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### Bug report
When the dataset and model have CMT column even `CMT = DROP`, `add_periphral_compartment` sometimes fails which interrupts AMD run and gives errors as shown. When CMT in dataset an…
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### Description of the bug
I'm running into an error when running nf-core/mag at prepping the GTDB-TK database. My config file contains the following:
```
params {
input = "/proj/snic2020-5-4…
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Today I found quite suddenly that any calls to difi resulted in a `FileExistsError: [Errno 17] File exists: '/DIFI_ARRAY' `error which persisted even in a fresh environment. (I'll post the full traceb…
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### Bug report
`res = run_estmethod(algorithm = 'exhaustive',model=model, results=results, covs='all')`
The algorithm argument (not sure if necessary for covmethod) accepts 'exhaustive', 'exhaustive…
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I have an emacs mode that sometimes inserts comments after an end in dash dash style - it works in ooRexx and NetRexx and the CREXX mode is the ooRexx mode. The compiler most of the time signals this …
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Hi!
I'm getting an incompatibility error when running tRNAscan-SE version 2.0.11:
```bash
tRNAscan-SE -G -o genomes/annotations/dram/intermediate_files/MAG4/working_dir/MAG4/tmp/raw_trnas.txt --t…
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**Describe the bug**
Pipeline execution trace shows failed status for the process `EVALUATE_ASSEMBLY:BUSCO`, and aborted status for the process `PURGE_DUPLICATES:MINIMAP2_ALIGN_READS`.
**To Reprod…
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Hi!
I'm encountering an error when installing the tools through the `python3 mcclintock.py --install`. Everything gets installed correctly but ngs_te_mapper2:
```
INSTALL Installing sc…
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See examples:
https://scan-bugs.org/portal/collections/individual/index.php?occid=57328819&clid=0
https://github.com/globalbioticinteractions/wis-ih-wirc/issues/3
https://github.com/globalbi…
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# Branch
_branch to be added later when target milestone is set_
# Proposal
Add entries:
in BUFR/CREX Table B,
Class 13 – Hydrographic and hydrological elements
Table reference Eleme…