-
Currently, features and their labels in bed-based tiers are drawn on separate lines. This can lead to very large tiers in the browser where you can't compare tiers easily. Have you considered creating…
-
Hi,
I used two mouse genomes (mm10 and GRCm39) and aligned my fastq files ( Links from Bowtie2 website: **https://genome-idx.s3.amazonaws.com/bt/mm10.zip** **and** https://genome-idx.s3.amazonaws.c…
-
Issues like this show that large amounts of data with small genomes e.g. covid can bog down the browser
https://github.com/GMOD/jbrowse/issues/1524
There are some things that this module cou…
-
Discussion and use case
https://help.galaxyproject.org/t/no-link-for-ucsc-to-visualise-datasets/12260/
From UCSC. This would either be in addition to the ucsc.builds.txt
You will also need all ge…
-
Then function [make_df] (https://github.com/hakyimlab/psychencode/blob/55ed82872238c7cad246fe3a61b8354cb45eb63e/analysis/generate_weights.Rmd#L72) incorrectly labels alleles from V5 and V6 as refere…
-
Instead of locations, I see whole chromosomes of each location.
JBR version:
JBR Genome Browser, build #1.0.beta.5379, built on July 16, 2021
Plugins JBR base tracks UCSC session IGV session …
-
Currently React is required to use the browser, however it's only needed for the headers which could be done via plain-old html
It would be nice to remove the React dependency to simplify the exper…
-
Hi, I was wondering if is possible to add to JBrowse the Drag and ZOOM functionality.
For example in genome-browser (1.x) is possible to drag the mouse in the Details panel, when the user have select…
-
We would like to support user logins and user-configurable behavior settings (or just the latter if it can be done without logins). For example, allow people to:
- choose which page sections are [comp…
mah11 updated
4 years ago
-
Hi,
Thank you for this great and simple tool!
I'm working with non-human data that which we have found many TAD callers seem to have a high false positive rate on - judging from how it adds up …