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Dear all,
Julian told me that I can request new CV entries here. Ideally we would like to have all the metrics that we are taking into account in the QCloud (see Table 1 of our paper http://journa…
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Expanding the metaproteomics workflow
There are two limitations of the current metaproteomics workflow that limit its utility for the community,
(i) peptide sequence identification currently requires …
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Hi,
I am seeing an error in PeptideShaker 2.0.0.
```
Sat Nov 07 14:05:13 PST 2020 PeptideShaker process completed.
Sat Nov 07 14:05:13 PST 2020 Processing Completed.
WARNING: An illegal refl…
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Hello everyone,
I've been using ms-gf+ for many years without any problem. However, recently on tmt data it's staying stuck at 0%.
below is a log example (running for 2 hours with 0% progress):
M…
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Hello,
I receive the following error when trying to use Sage (through SearchGUI) with multiplexed (TMT-10) files:
```
Fri Jul 12 20:55:05 UTC 2024 Importing spectrum files.
Fri Jul 12 20:55:…
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### Description of the bug
@WangHong007 @zprobot @daichengxin:
I have been recently testing multiple USIs generated by quantms for DIA experiments. A little background about the problem, USIs a…
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Crux-version: 4.1-f575777-2023-01-13
For a specific peptide (SCNPGDLHECVGYFIGCHGPFDKCLANK, with static +57.0215 modifications on C, and precursor charge 3+), I've calculated that theoretical fragme…
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Hi,
I want to extract the protein LFQ intensities for fractionated data. I tried the sum but it appears to be wrong.
This paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7563855/) states "Flas…
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Hi,
I was trying to run the standalone version of PepQuery with following command to identify novel peptides -
`java -Xmx30G -jar pepquery-2.0.2/pepquery-2.0.2.jar -b CPTAC_Prospective_Ovarian_JH…
anuC updated
2 months ago
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Experiment with Contranovo's approach: add a contrastive term to the loss function that aims to enhance the similarity between the encoded spectrum and encoded peptide.