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### Description
I think the title is describing perfect the meaning, I believe Generate Press should create a second theme in parallel with classic GP theme.
Invest on design patterns and promot…
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### Description of the bug
Im processing a dataset using proteomicsLFQ and it fails when it found empty list of peptides in one of the idXMLs.
```
TOPPBase.cpp(1605): Value of string option 'kee…
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We would like to use quickquasars to generate Lyman alpha mocks for eBOSS. That would be useful for eBOSS, but it would also increase the number of eyes and hands on quickquasars and the London mocks.…
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The stored MAP spectrum in .h5 file seems to have slightly different properties compared to the one that can be reproduced by the max_theta values.
In the screenshot, the cyan photometry and blue …
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It would be of great help if more test wdf files can be included in the repo to debug different WiRE versions / data types. @expert-git
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I don't understand why you would generate an out put from Xisearch which cannot be directly input into xiSpec, the headers are inconsistent and you have to reformat the entire file- one column needs t…
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I would like to ask exactly how the input spectrum should be normalized. In the code it says:
`file: an ASCII spectrum of a quasar. It should be normalized
to avoid bad pixels. It should be …
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Hi! I installed Starfish in my laptop computer (Ubuntu 16.04). I followed the instructions and had no issues until trying to follow the example for WASP14.
The error appear when trying to run:
$ p…
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I searched and didn't see any issues for this error specifically, but for some observations, the `iir_params` dictionary populated by `_load_book_detset` in `load_book.py` contains `None` for the IIR …
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It would be great if Percolator PSM-level tab-delimited output files could be supported by FlashLFQ. I looked into this, and there are two major and several minor challenges associated with making th…