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Greetings @brianjohnhaas,
I am trying to run trinity on my institute HPC using singularity. I have succeeded for many times, but recently, there is a possibility of failure. It says all commands co…
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## Check Documentation
I have checked the following places for your error:
I have checked both of these and looked through the introduction to see which steps might require the genome.
- [x] …
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this isn't really a bcbio problem but i thought i would give a heads up:
using bcbio 1.9.0 bulk RNA-seq pipeline with BDGP6 genome, salmon crashes because some transcript lengths in the reference fas…
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### Description of feature
Hello ! Sorry for asking for so many new MultiQC features, I just love using MultiQC so much :)
For now, MultiQC parse only the number of mapped reads in the Salmon outp…
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# Describe the bug
I had 5 salmon and was not able to get an option to do a bulk field dress/bleed of the corpses. I was able to to it for each corpse separately though. The Butcher all screen re…
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I am under the impression that the gather-counts.py script for salmon file processing works with salmon 0.8.0, and is non-functional for salmon 0.7.2, however I might be wrong.
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Alevin is a new mode in Salmon that handles single-cell (https://github.com/COMBINE-lab/salmon) (https://github.com/COMBINE-lab/salmon/blob/1695160fe8b7585b49fd7e2a458a7f867b311ebb/doc/source/alevin.r…
roryk updated
6 years ago
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Deseq normalization cannot be applied to a single sample.
Maybe default target could be set to mulitqc when only single sample is given.
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Hello,
When I run "python3.5 ~/.local/lib/python3.5/site-packages/SUPPA/multipleFieldSelection.py -i quant.sf -k 1 -f 4 -o 2m-1_iso_tpm.txt", the err is:
INFO: Reading file: quant.sf
INFO: File …
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Some PSE known spawning occurs in streams with `edge_type=1050` (Single line blueline, main flow through wetland), but these are excluded from the existing models. Evaluate impact of broadening model…