dib-lab eel-pond issues

dib-lab / eel-pond

mRNAseq assembly, evaluation, and expression analysis

2 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Trigger build with khmer latest

#49 standage opened 7 years ago
2
expected transrate and busco output from subset

#48 johnsolk opened 7 years ago
0
add miniconda3 bin to PATH

#47 johnsolk opened 7 years ago
0
edit documentation for step 1

#46 johnsolk opened 7 years ago
0
Issues with UCD farm cluster installation instructions

#45 johnsolk opened 7 years ago
0
0-install-aws.rst salmon installation

#44 taylorreiter opened 7 years ago
1
Make changes to installation instructions

#43 johnsolk opened 7 years ago
1
Fix link now that DE branch is merged

#42 standage closed 7 years ago
1
Separate installation & execution instructions for dammit

#41 standage opened 7 years ago
0
nema edgeR plots & busco output w full dataset

#40 smack33 opened 7 years ago
2
Permission denied on "Interleave the Sequences"

#39 smack33 opened 7 years ago
4
PR status

#38 johnsolk opened 7 years ago
3
DE analysis with edgeR

#37 johnsolk closed 7 years ago
0
Thoughts on formatting 7-differential-expression.rst?

#36 johnsolk opened 7 years ago
4
Create 0-install-ucd-farm-cluster.rst

#35 johnsolk opened 7 years ago
0
Salmon install and commands

#34 johnsolk closed 7 years ago
0
Biological replicates?

#33 johnsolk opened 7 years ago
0
document creation of docker container diblab/eel-pond for CI

#32 ctb opened 7 years ago
0
add a basic travis file in order to activate the Travis service.

#31 ctb closed 7 years ago
1
add docker configuratin'

#30 ctb closed 7 years ago
14
Add links to lab tutorials

#29 johnsolk opened 7 years ago
1
Add 0-install-hpc.rst and 0-install-Jetstream.rst

#28 johnsolk opened 7 years ago
2
Dammit install and execute instructions

#27 ctb closed 7 years ago
9
provide an inventory of output files by page

#26 ctb opened 7 years ago
0
Add transrate and busco

#25 ctb closed 7 years ago
3
update khmer-protocols repo to point here!

#24 ctb opened 7 years ago
0
draft principles for protocols

#23 ctb opened 7 years ago
8
Fix up literate resting/automated tests for steps 1-3

#22 ctb closed 7 years ago
1
add continuous integration

#21 ctb closed 7 years ago
1
Don't delete trimmed reads, we need them!

#20 johnsolk closed 7 years ago
2
fix jdk 8 install, needed for trinity

#19 ctb closed 7 years ago
0
OpenJDK 8 JRE not available on Ubuntu 14.04

#18 standage opened 7 years ago
1
add link to oyster river protocol somewhere

#17 ctb opened 7 years ago
1
add show/hide toggle bits of information

#16 ctb opened 7 years ago
0
Use this for Ubuntu 15.10

#15 johnsolk opened 7 years ago
1
Migrate to python3

#14 standage opened 7 years ago
1
switch to using python 3.5 instead of python 2.7 if possible

#13 ctb opened 7 years ago
1
Missing file extension at the end of the diginorm instructions

#12 standage opened 7 years ago
0
Update diginorm

#11 ctb closed 7 years ago
0
Wrong directory in diginorm instructions

#10 standage closed 7 years ago
2
don't use Ubuntu 16.04 for now

#9 johnsolk opened 7 years ago
0
Add threads to fastqc step

#8 standage opened 7 years ago
2
add test data set link; move orphans.fq.gz to orphans.qc.fq.gz

#7 ctb closed 7 years ago
1
can we put a "copy this literal text" button on rest/sphinx documents?

#6 ctb opened 7 years ago
0
point users at subset rnaseq data set for testing/first time through

#5 ctb opened 7 years ago
1
Checkpoints

#4 standage opened 7 years ago
1
s/screen/tmux/g

#3 standage opened 7 years ago
1
Split out setup info from QC

#2 standage closed 7 years ago
1
Update front matter

#1 ctb opened 7 years ago
0