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Hi,
congrats on the launch of PyDESeq2 -- I've been waiting for that for ages.
I'm a core developer of [scverse](https://scverse.org/), and we want to foster interoperability of python package…
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# Discussion worksheet
## The paper you are working on?
Su, Y. et al. Multiple early factors anticipate post-acute COVID-19 sequelae. Cell 185, 881- 895.e20 (2022).
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## Mai…
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https://mp.weixin.qq.com/s/vq9dBOH_qDZlg-7hLsu9Dg
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In cell hashing or CITE-seq datasets, an additional count matrix is produced and it stores how many ADT/HTO barcodes (see this for details https://genomebiology.biomedcentral.com/track/pdf/10.1186/s13…
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Hi,
There are various tools to perfrom batch effects removal or data integration in scRNAseq, such as CCA (seurat), scvi-tools, harmony, scanorama and so on. Can I use mofa/mofa2 for this purpose ? I…
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https://mp.weixin.qq.com/s/YnO9IeNfvqcJq4gcNWaxeA
ixxmu updated
7 months ago
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Hey thanks for the package. I was reading the dictys paper on bioarxiv and it says
To reconstruct a context specific GRN for each group of cells, Dictys first infers TF binding sites in regulato…
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As discussed with @ambrosejcarr
The AnnData schema is being used internally in new formats for multimodal and spatial formats. Example of this are:
* [MuData files](https://mudata.readthedocs.i…
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New projects (10):
1. [Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types](https://data.humancellatlas.org/explore/projects/16e99159-78bc-44aa-b479-55a5e903bf50)
1.…
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when i import scvi i got this result, i install scvi through this code !pip install scvi-tools and I import it through import scvi
```python
# Your code here
```
1 import scvi
~\an…