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As [reported on Twitter by Keith Robison](https://twitter.com/OmicsOmicsBlog/status/1578468479585644545), `samtools fqidx` by default uses the same line wrapping as `faidx`:
```
$ cat eighty.fq
…
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Hi there,
Just wanted to say great paper, its fantastic that you can push the throughput by optimizing the decrosslinking.
I am currently using Pore-C but adapted using DNase based method to fra…
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Hi, I wanted to ask if you could help me with canu metagenome assembly. I have tried the command you gave in this issue https://github.com/marbl/canu/issues/2150
It always starts to work but then i…
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Hi @igvteam,
From version 2.1 IGV is able to display CpG methylation based on Bisulfite induced mismatches with the reference sequence. This is a very nice a feature which allows to visualise the C…
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@ambrosejcarr commented on [Thu Aug 13 2020](https://github.com/chanzuckerberg/corpora-data-portal/issues/524)
Appetite: ?
This question is limited to 10x scRNA/snRNA and Smart-Seq2-like assays.
S…
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https://mp.weixin.qq.com/s/4QtKOfpJMRSo8TRl4z6wmg
ixxmu updated
2 years ago
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### Overview:
To facilitate the integration of GEO PEPs with other PEP tools (namely pephub), it would be **super** helpful to have a flag for `geofetch` that makes it create a `.pep.yaml` file in th…
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Hi .
My canu job keeps failing at the assembly stage. I'm running my analysis on canu 2.1.1. on the university linux server with slurm scheduler, I've tried repeating twice and now i'm at the ask …
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Hi guys,
This is a bit of a reply to your responses in my previous issue #9, regarding the new consensus step, and might not be totally appropriate for the issues section - but I've read through yo…
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…