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pepkit
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geofetch
Builds a PEP from SRA or GEO accessions
https://pep.databio.org/geofetch/
BSD 2-Clause "Simplified" License
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Downloading the supplementary files
#138
Zethson
closed
2 days ago
2
remove docs
#137
khoroshevskyi
closed
2 months ago
0
how to get GSE information for a SRR run id?
#136
lizhebio
closed
4 months ago
2
use VersionInHelp parser
#135
nsheff
opened
6 months ago
0
Update docs
#134
khoroshevskyi
opened
6 months ago
0
Prefetch check
#133
pedro-w
closed
6 months ago
0
Release 0.12.6
#132
khoroshevskyi
closed
6 months ago
1
Update installation of prefetch in docs
#131
khoroshevskyi
opened
7 months ago
0
fetch_all does not work
#130
kapedalex
closed
6 months ago
11
Downloading metadata for all GSE
#129
srp33
closed
6 months ago
9
Are Greek letters causing errors ?
#128
khoroshevskyi
opened
8 months ago
0
geofetch is changing sample_names where `+` and `-` are and changing it to underscore
#127
khoroshevskyi
closed
8 months ago
1
Add GSE number to sample_name if big concatenated project is created
#126
khoroshevskyi
opened
8 months ago
0
Release 0.12.5
#125
khoroshevskyi
closed
9 months ago
1
PEP description is None
#124
khoroshevskyi
closed
9 months ago
0
Download metadata from SRA
#123
amnahsiddiqa
closed
11 months ago
2
Release v0.12.4
#122
khoroshevskyi
closed
1 year ago
1
Make geofetch more efficient
#121
khoroshevskyi
opened
1 year ago
4
v0.12.3
#120
khoroshevskyi
closed
1 year ago
2
Geofetch should preserve order
#119
khoroshevskyi
closed
1 year ago
0
No files found and No data to save when trying to download GSE files
#118
Yijia-Jiang
closed
1 year ago
2
fixed docs
#117
khoroshevskyi
closed
1 year ago
0
Remove test dependencies from actual GEO files
#116
khoroshevskyi
opened
1 year ago
0
Release 0.12.2
#115
khoroshevskyi
closed
1 year ago
1
Add max size option / argument for prefetch
#114
vreuter
closed
1 year ago
1
Can't download SRRs larger than 50GB
#113
drejom
closed
1 year ago
3
Report error in downloading SRA data
#112
GuohuaZhu
closed
1 year ago
3
v0.12.1
#111
khoroshevskyi
closed
1 year ago
1
V0.12.0
#110
khoroshevskyi
closed
1 year ago
2
Make sure Project level attributes are added to project file
#109
khoroshevskyi
closed
1 year ago
0
Update pandas version
#108
khoroshevskyi
closed
1 year ago
0
V0.11.2
#107
khoroshevskyi
closed
1 year ago
0
Created PEPs don't contain some of the information
#106
khoroshevskyi
closed
1 year ago
0
`sample_name`s for processed files can be same what leads to downstream problems
#105
khoroshevskyi
closed
1 year ago
0
geofetch creates unwanted empty folders
#104
khoroshevskyi
closed
1 year ago
0
Dealing with GEO tables
#103
khoroshevskyi
closed
1 year ago
0
Disable downloading huge soft files
#102
khoroshevskyi
closed
1 year ago
5
release 0.11.1
#101
khoroshevskyi
closed
1 year ago
0
geofetch produces incorrect link to sra file
#100
khoroshevskyi
closed
1 year ago
1
Error in expanding metadata list
#99
khoroshevskyi
closed
1 year ago
1
Error while downloading project
#98
khoroshevskyi
closed
1 year ago
1
Bugs and redundancy in requirements
#97
khoroshevskyi
closed
1 year ago
0
Naming and docstring refactoring
#96
khoroshevskyi
closed
1 year ago
0
Fix of colons in config file
#95
khoroshevskyi
closed
1 year ago
2
Naming and docstring refactoring in geofetch
#94
khoroshevskyi
closed
1 year ago
1
Release v0.11.0
#93
khoroshevskyi
closed
1 year ago
1
colons in values
#92
nsheff
closed
1 year ago
5
subsample null
#91
nsheff
closed
1 year ago
2
Error in producing config file for raw data
#90
khoroshevskyi
closed
1 year ago
1
Add example to the cli
#89
khoroshevskyi
closed
1 year ago
0
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