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atcg updated
11 years ago
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Some uniprot accessions are not available for querying nor as output in the "uniprot" field/scope. To illustrate I've included 2 examples, one accession that works (P63044) and one that fails (P23819)…
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Hello everyone. I got a error when run metawrap1.3.2-mg in an independent conda environment, do you know how to solve the problem? Many thanks! The error is pasted as follows:
```
metawrap classify_…
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Dear Emese,
First of all, thank you for creating this tool and the documentation. They are really helpful. I created a custom database to use with the blast+ command line utility. However, the result…
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Hello, I am trying to build a database for taxor using ncbi refseq sequences from Prokaryotes, Archaea, Bacteria, Virus and Fungii (almost 50k orgamisms in total).
` taxor build --input-file ../../t…
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Excuse, I have copied the samples from #76 and #136
#12,10 1,1
>101 102
MGSSHHHHHHSQMTVVPPEGAI
>UniRef100_XXX1 UniRef100_XXX2
MGSAHHhhHHHHSQMTAAaPPEGAI
>101
MGSSHHHHHHSQ----------
>UniRef100_X…
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Hi,
we have observed a perfomance issue when giving a custom index path to centrifuge. Indeed, when using the standard index location, our job finishes in 10 minutes (see command 1 below for the comm…
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Hi! I have read the DeepMicrobes paper and it is great work! I'm planning to train the DeepMicrobes model using my data and I want it to predict the taxonomy of a given DNA sequence from phylum to spe…
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In the following code in `collapse_taxonomy.R`, if either nodes or taxid lineage dump file are missing, it will error out. The `|` in the `if` should be `&&`. I added error handling if only one or …
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When typing `pombe` in the species - taxon ID input field, several other sources appear (e.g. "Schizosaccharomyces pombe expression vector pDUAL2-HFG1c - 477364"). When selecting this, the following e…