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Integrate monai label server with XNAT
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Hi,
I see the vcf is generated from deepvariant.
Is it more reasonable to use deepsomatic to call snv in tumors, as opposed to using deepvariant?
I am confused about the choice of vcf, shoul…
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Hi,
I have RRBS data from 44 Lung cancer samples (Ctrl and diseases). There is high heterogeneity beside the tumor cells in the samples, that is why after pre-processing with RnBeads, I submitted the…
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This ticket aims to get a better handle on how oncogenicity and pathogenicity are related, and the constraints we should model around them with respect to variant origin, the disease object, and the s…
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Hello,
We are hoping to install vcf2maf as a new module in CCR for analysis of DNA mutation calls. Here is the link to the github repository containing the package information: https://github.com/…
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I am extremely new to this area but I would like to create a fully automatic image segmentation technique using active contours. The goal is that this could later be used in conjunction with some of t…
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In order to facilitate efficient modes of replicating objects between EDV instances a core optimisation would be enabling the capability for an EDV to appropriately identify duplicate objects. With so…
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Hello!
I was running Mesmer to segment whole tumor images (~36k by 42k pixels) on an M60 GPU and I asked for 450G RAM. I have a few questions below and would appreciate any input. (Also I've tried…
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I have a set of images from the TCGA repository with artefactas(mainly penmarks) on the slides. The issue is that when CLAM toolbox is used for the segmentation it is only identify the penmarks and le…
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This issue is to track and discuss any install/run issues related to the COLO829 cross-site demo of the `wgts.snv_indel` plugin.