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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
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I am trying to find the best way to identify overlapping genes in my complete viruses extracted from metagenomes. I tried genotate hoping that it would identify them contrary to prodigal-gv and phanot…
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I am very grateful to you for developing this excellent software. I want to know how the function of eliminating false positive non viral components (bacteria and fungi) in the software is implemented…
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Hi Yuxuan,
I am trying to retrieve virus-host pairs with ViralCC since it seems that I can do this (according to your paper). However, there is no such information in the output files. Can I achiev…
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### Description of feature
Include a catch way for those that don't have any contigs & map, not kmer based but alignment to all viral species and idenfity the construct that has the most hits.
The…
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I'm opening this issue here because I believe it's more of a pufferfish-related matter, but will use the issue template from your salmon repository.
**Is the bug primarily related to salmon (bulk m…
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Hi jiarong:
Thank you for develping this nice tool. I met a error, could you help me for that?
My commond is like:
`virsorter run --keep-original-seq -i 5seq.fa -w vs2-pass1 --include-groups dsDNA…
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WARN: Killing pending tasks (4)
executor > local (44)
[4e/034777] process > csv_validator (Checking met... [100%] 1 of 1 ✔
[4c/db9b0a] process > db_manager (Downloading mis... [100%] 1 of 1 ✔
[…
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Hi developer:
Thank you for developing such nice tool! Here I have several questions to ask:
1.I read some papers that indicate when using Virsorter2 to get viral contigs, usually only choose the vi…
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### Description of the bug
When I run the Docker profile using virtoprofiler, I run test data with the command/ Nextflow run deng lab/viroprofiler - r main - profile docker, test, but an error was re…