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Hi,
I have successfully used Canu for all my de novo assemblies and I am embarking on creating a snakemake-env for running Canu+medaka+diamond for viral metagenomic sequencing. Has anyone successf…
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- Describe the issue or question:
Hello,
Thank you for developing, and continually updating, a great product!
I was wondering if there is a file within the Fragpipe output that includes sequen…
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Apparent de novo deletion is not recognized as such with `mpileup --indels-cns` because alternate AD counts in parents are thought to be bigger than zero.
In the [test case](https://raw.githubuserc…
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I'm getting the above listed error. This is odd, as I've actually run this successfully previously, with a different subset of the same input reads!
If you happen to have any insight, I'd greatly a…
kubu4 updated
6 months ago
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When I try to run the following command:
`se filterTranscriptsByAnnotation
Execution halted`
Is there something that I'm missing? I'd like to run Bambu in its de novo mode.
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Hi egaffo, thanks for the prompt reply. I tried the new docker but I keep having a similar error:
user@NGS:~/CirComPara$ sudo docker run -u `id -u` --rm -it -v $(pwd):/data egaffo/circompara2:v0.…
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Hi,
I was wondering why Canu would be less accurate at assembling viral genomes with low sequencing read depth? Are most de novo assemblers less accurate with low sequencing depth?
Thanks! Katie
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Hi Schulte,currently, you I select folders as input and attach extra parameters for Peaks files. If I want to use result files from various different software tools (such as pNovo and Casanovo) placed…
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2 files (and checksums) available at
https://gannet.fish.washington.edu/seashell/wd/ln/
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Hi Rick,
I'm sorry for interrupting you again.
I have one question.
In the Fig 2' legend in your preprint, you showed that:
> singletons that have been rephased by the SAPPHIRE method (43% of …
koido updated
10 months ago