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A user suggested gramene to include sweet cherry genome. Investigate if there is a sweet cherry genome that meets Epl-Grmene inclusion criteria. ie, published, genome deposited in INSDC, gene annotati…
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Hi,
I m trying to impute HLA in TopMed Imputed data using Michigan Imputation Server. However job fails stating "**Calculating QC Statistics failed**". Also, when I try to impute Michigan Server Impu…
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Hi,
I wonder how the genotypes of the parents are corrected using the progeny allele counts. I guess with "correct_variant_types()", in offspringscoring.py? What I find strange is that on my VCFs s…
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http://doi.org/10.1101/069096 (also http://biorxiv.org/content/early/2016/08/11/069096 because the DOI isn't working for me)
**At a glance:** Uses a pretrained DeepSEA model (#13) to filter and group…
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Hi,
The CSV (pasted below) is wrongly handled at some points.
It seems that when a number like 2013 or 2012 appears in the cell value, then it is considered as a date.
It is a bit agressive an…
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Hello!
I’m looking to do some analyses regarding heritability (h2) at single-variants overlaying some genetic features (more than annotation enrichment via LDSC, for example). Is there some way to ha…
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I added submenu, GCViT(Chickpea) under Species/Cicer arietinum/. It doesn't show up in the dropdown from Species in main menu. Not able to figure out why? Need help!!
(Trying this in lis-dev first)
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In Umeå, Scout has been selected as the primary tool for genetic variant interpretation and as a repository/database for variant information. However, there has been a request to also have the option …
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Hi,
I have been running fastGWA-mlm and have been getting the error 'the V matrix is not invertible.'
Prior to running the GWAS I have rank inverse normal transformed by continuous variables and …
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**Using HapMap genetic map is not giving correct results:**
I simulated 500 individuals of each of the four populations of the demography model, AmericanAdmixture_4B11, with and without using the pro…