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Hi, I am new to Signac, and thanks for developing such a useful package. I have 6 multiomic samples (2 treatments and 3 time points) that measure both DNA accessibility and gene expression in the same…
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Hello,
I'm trying to run TFmodisco-lite on counts_scores.h5 file to carry out motif discovery. However, the command doesn't seem to run and no output or error is generated. The job ends due to Time…
rb56 updated
10 months ago
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Hello,
Thanks for developing this great tool. I am trying to use pySCENIC to analyze the data from a Seurat object via docker. I initially tested with a subset of data (32802genes X 4045cells ). H…
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I am trying to visualize some aspects of the bedmethyl file for specific regions so a reference genome.
I used the default setting for modkit pileup to generate the bedmethyl from a sorted bam file.…
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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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Good day,
I am having issues saving a Seurat object with `SaveH5Seurat`. Do not know what the problem can be.
```
Creating h5Seurat file for version 3.1.5.9900
Adding counts for RNA
Addin…
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I am creating this issue as a master thread for what everyone thinks about the current UI, and how we can improve it, along with my thoughts, of course. I will continue editing this issue as I come up…
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`object
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Hey, thanks for the great tool. How are you dealing with problems related to multiallelic short tandem repeats? For example, RFC1.
https://github.com/broadinstitute/str-analysis/issues/12#issue-213…
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Using the current master branch:
```
$ cd Tests/
$ python test_Tutorial.py > /dev/null ; echo "Return $?"
/Users/xxx/repositories/biopython/Bio/Align/AlignInfo.py:63: BiopythonDeprecationWarning…