-
We have auto-generated content, including uniprot IDs, papers (dois?), etc.
Need:
- somewhere to put it
- somewhere to populate it
- clear links from landing page
Might use Discourse, or po…
-
Were trying to get an pae_interaction less that 10, but when we put the contig as A100-200/0 70-100 we get i_pae (we assume its the pae_interaction score) as around 26, but when we use contig of 70-10…
-
Hello,
I needed help on how to go about generating embedding after ProtT5 has been finetuned. I have carried out finetuning of the model using the sample code 'PT5_LoRA_Finetuning_per_residue_class…
-
## Discussion
This issue is to facilitate discussion of physical property data for use in the next round of OpenFF fitting. The idea here is to have overarching discussion in this thread, and have…
-
I am trying to figure out how Evodock works.
Could be that I am mistaken and didnt get the real pourpose of the tool. I am trying to use:
> Local assembly - Predicting assembly structure from mu…
-
Since CENP-A is not loaded in mitosis, it should be possible to add "during_interphase" to all of these.
https://www.pombase.org/term/GO:0034080
-
**Background**:
- [Genome Nexus](https://www.genomenexus.org/) is a comprehensive resource integrating variant annotations from more than a dozen sources relevant to cancer. The annotations can be a…
-
Generating proteomic databases from 16S rRNA / taxonomy data.
TOOL IDEA:
Given that most of the metagenomics studies are based on 16S ribosomal RNA-based taxonomy identifications, a tool availabl…
-
I am trying to run yank on a system where the ligand is a peptide, and it does not seem to recognize the peptide for alchemical modification, such that all of the "alchemical" states are exactly the s…
-
## Is your feature request related to a problem? ##
modernize HBA (HydrogenBondAnalysis) to use AG (AtomGroups) as objects internally instead of selection strings to avoid the need for HBA analysis t…