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Hello, everyone!
I am working on the analysis of the metatranscriptome of unicellular algae - non-model organism. I have a reference genome sequenced and published by my colleague.
Due to the fact…
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Hi
I am trying to do fusion neoantigen prediction using Arriba, however STAR can't cope with long reads and ideally STARlong should be used - do you think this will be able to be supported please?
…
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```
I have been using STAR with Illumina 101bp paired end reads. The first set of
libraries I sequenced work great going through the pipeline, but I have had a
very strange problem with the most rec…
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lordfast --search CH17-157L1.fasta --seq 1-1.fastq -t 8
| *Reading Input* | 0.00 | XXXXXXXXXXXXXXX | 226.15 | XXXXXXXXXXXXXXX 2500 |
[New Thread 0x7fffbfe01700 (LWP 3…
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Hi @ivargr ,
I saw that the [results](https://github.com/ivargr/mapping-benchmarking/blob/benchmarks/reports/main.md#accuracy-for-different-error-profiles) look sort of new, and wondered which stro…
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Hi everyone!
I am polishing a Nanopore assembly with Illumina short reads via pilon. On one contig, it is assumed to be two inversed repeats. As illustrated by the variable scale in the coverage plo…
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Dear developers,
I would like to try out Whisper for mapping paired end short reads against a very large and fragmented genome assembly (100s of thousands of contigs). It is inconvenient and a file…
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Hi,
Thanks for the clear documentation and awesome tool.
I would like to get the unique matching path for each read.But through the following code, I saw that in the output gaf file, many reads corr…
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### Elasticsearch Version
7.17.1
### Installed Plugins
_No response_
### Java Version
_bundled_
### OS Version
Any OS
### Problem Description
Upgrade to 7.17.1 fails to create mappings for th…
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Dear Ben,
Thanks for this great tool.
I have tried to use it recently to map small RNAs to virus genomes. I was expecting 21 nt long reads to map, indicating that host immune system responded t…