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### identificationID (property)
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| ---- | ---- |
| **Definition** | An identifier for the Identification (the body of information associated with the assignment of a scientific name). May b…
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I have been thinking about how to make all of the `taxa` classes most useful and I think I have come up with a way to reorganize things that will make things more natural and R-like, while increasing …
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Hi,
UBERON:0004122 genitourinary system has_part UBERON:0001008 renal system,
but UBERON:0001008 renal system is not part_of UBERON:0004122 genitourinary system.
This is causing issues for disease …
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The first time I used R taxonomy I noticed some different "dropped" patterns than the standard eDNAFlow typically provides. Here is a summary of taxonomic assignment at all levels with R taxonomy:
23…
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re #970, how might we move towards a model where we regularly (weekly? monthly?) release genbank/refseq databases that take into account new and revised genomes?
random thoughts -
* updating taxon…
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Thanks and regards as ever to the devs.
I'm considering several sets of 'omic data generated from the same cohort of ```FASTQ``` files (i.e. taxonomic, pathways, etc). The way of the CoDa seems a …
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### Description of feature
I don't have a lot of experience with all the tools so I can only speak for kraken2 and Bracken:
### kraken2
* It can be disastrous to not set the `--confidence` para…
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Hi, I reanalysed my Illumina miseq data and found some discrepancies between the old and my new results. I will post my code and the R output here in the hope of receiving some feedback on the accurac…
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Dear @benjjneb, I ran DADA2 on my microbiome data and got an issue with taxonomic assignment.
I am working with synthetic microbial community so used customized database (full length 16S rRNA gene s…
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Hi,
I am using mmseqs2 for the taxonomy assignment using NR database. However, Estimated memory consumption is 2T. Is that normal? Also, my input is already protein. My another question is about th…