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### Description of the bug
Hey all, I am looking at the `cellranger mkref` module and noticed that automatic available resources detection has been added, but I think I have spotted an inconsistenc…
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
heylf updated
1 month ago
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Hello,
I heard that Meringue was used to compute the correlation between genes in the Visium 10XGenomics public datasets posted on their website (https://www.10xgenomics.com/resources/datasets). Is…
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I have used the raw feature-barcode matrix from https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/pbmc4k and have ran CellBender with defaults. I am wondering why the test ELB…
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I recently attended HCA Asia, and an attendee requested that Ensembl transcript IDs would be accepted as feature variables for the count matrix, especially for Smart-Seq data. He noted that the reason…
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Hi Kevin, sorry to bother you here and misuse GitHub :) but I did not know how to reach you.
I am working with scaden and I need to do some tests.
I am struggling to obtain the test data to reprod…
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# 10x single cell data preprocessing
open web page, click ENDPOINTS, click 'Create a personal endpoint', it would ask you if you'd like download a Globus installation dmg file.
Use Globus 'Prefe…
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**Describe the bug**
The following GTF URL from 10x fails to be downloaded from 3 different galaxy instances (Org, EU, private 22.05 and another private one on a different version). The download wo…
pcm32 updated
1 month ago
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istar is a really nice work!
But I have the following concerning about applying istar to 10× Visium data.
① Usually, the output of 10× Visium data include a folder named spatial, which containing…
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Dear 10X team,
I was wondering whether it would even be legal to include `loupeR` into a Docker container to run a Nextflow pipeline and output the Cloupe file (from a Seurat object, so the cloupe fi…