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The current process for adding Biolink categories to classes looks like this in the Makefile:
https://github.com/monarch-initiative/phenio/blob/7e882424dde9f2a057904b671c56a90239801913/src/ontology/p…
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Given the following query:
```json
{
"message": {
"query_graph": {
"edges": {
"t_edge": {
"attribute_constraints": [],
"knowledge_type": "inferred",
…
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Should be `biolink:primary_knowledge_source` instead of `biolink:original_knowledge_source`; reported in NCATSTranslator/Feedback#813
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Pipeline is currently failing due to `ontobio` parse issue
https://github.com/biolink/ontobio/issues/689
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The [Biolink model](https://github.com/biolink/biolink-model) has a native adapter inside BioCypher core. See https://biocypher.org/tutorial-ontology.html
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Approach: SmallMolecule → drug conflation in NN, with Vlado providing the mappings
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```
match (a:`biolink:NamedThing`)-[x:`biolink:has_part`]->(a) return count(a)
```
Returns 278 results. These are coming from ubergraph. These aren't wrong exactly but they're pretty useless.
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We have two different CHEBI's for location of:
CHEBI:33290
CHEBI:24632
One of these is in the opposite orientation:
urn:uuid:787caa6b-dd79-479c-b730-cb19a11ac3b2 CHEBI:24632 biolink:location…
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A good example is UMLS:C0006050, which is present both as its own clique and is also present in a completely different clique, since they are chemicals and proteins respectively: https://nodenormaliza…
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See #811
Specifically this error:
```
=> Edge has a deprecated 'attribute_type_id'
$ infores:bindingdb -> infores:biothings-bindingdb -> infores:service-provider-trapi
# biolink:qualifi…