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### Prefix
mir
### Explanation
Should "mir" (aka: "MIR") be merged with "pdb"?
The bioregistry.io link: https://bioregistry.io/mir:00100037 on this page: https://bioregistry.io/registry/mir do…
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We are using the ideosyncractic `WB`.
Bioregistry suggests `wormbase:` for the genes, which I think is fair. Can we change that? Basically, this will make the custom prefix map redundant.
https…
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This does most of what we set out to do with this repo and more: https://github.com/bioregistry/bioregistry
There are still some things this repo does that bioregistry doesn't do, but these could p…
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@cthoyt, let's say, I would be adding Bioregistry-style compact identifiers as `Literal`s to the WikiPathways RDF, is there already an ontology with a predicate for such identifiers?
Let's say we h…
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to be consistent with bioregistry and uniprot
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Chris Hunter presented at Biocuration 2023 that GigaDB is annotating datasets using controlled vocabularies (mostly ontologies). It would be great to use the Bioregistry in this in a few places:
1.…
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**Describe the bug**
There are rows that contain non-PMID IDs in the `PMID` field of the `literature/matches` data.
**Observed behaviour**
Specifically, there are IDs with the following prefixes …
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hi all, cool to see you're building a new KG! What can I do to help make sure that the entities in your KG are referenced with standardized CURIEs?
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There's a huge amount of prior effort in normalizing identifiers built in to the bioregistry, including support for "preferred prefixes" which include opinionated stylization. Can you help me better u…
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Implement a high-level interface to coordinate multiple adapters and their contents for application purposes.
Workflow:
- `pipeline.start()`
- `pipeline.add_adapter()`
- `pipeline.find_identifie…