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monarch-initiative
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monarch-gene-mapping
Code for mapping source namespaces to preffered namespacing
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Switch to merged from prefixmaps 0.1.7 for curie standardizing
#39
kevinschaper
closed
8 months ago
1
Change wormbase mapping to `wormbase:`
#38
matentzn
opened
8 months ago
6
Add more prefixes (maybe not necessary?)
#37
matentzn
closed
8 months ago
3
switch to sssom converter
#36
glass-ships
closed
8 months ago
6
Instead of obo_converter, use the SSSOM EPM directly
#35
matentzn
closed
8 months ago
3
use obo converter to standardize something
#34
glass-ships
closed
8 months ago
0
Setting string type
#33
glass-ships
closed
9 months ago
0
assess-dangling-edges
#32
RichardBruskiewich
opened
1 year ago
0
`{prefix}:<NA>` making it into output SSSOM
#31
kevinschaper
closed
9 months ago
2
Switch NCBIGene to the subject column for mappings from UniProtKB
#30
kevinschaper
closed
1 year ago
0
Make Alliance produce NCBIGene: curies rather than NCBI_Gene:
#29
kevinschaper
closed
1 year ago
0
Uniprot pre-process tweaks
#28
kevinschaper
closed
1 year ago
0
Issue 3 add uniprotkb to preferred gene mappings
#27
RichardBruskiewich
closed
1 year ago
0
HGNC fixes
#26
kevinschaper
closed
1 year ago
0
Add code to pull mapping from Alliance tsv instead of BGI
#25
amc-corey-cox
closed
1 year ago
3
Correct column names and extra columns from previous PR
#24
amc-corey-cox
closed
1 year ago
1
Add DictyBase to UniProtKB mappings
#23
kevinschaper
closed
1 year ago
1
Combine hgnc and ensembl into single tsv extraction
#22
amc-corey-cox
closed
1 year ago
0
Add Dog, Cow, and Pig taxons for ENSEMBL mapping.
#21
amc-corey-cox
closed
1 year ago
1
Add PomBase to UniProtKB mappings
#20
kevinschaper
closed
1 year ago
1
Add Rat to UniProtKB mapping
#19
kevinschaper
closed
1 year ago
1
Add Ensembl and UniProtKB mappings for Dog, Cow, Pig and Chicken
#18
kevinschaper
closed
1 year ago
3
Re-applying fix to download.yaml for hgnc/ensemble
#17
amc-corey-cox
closed
1 year ago
1
Revert "Fix download and run error for hgnc and ensembl"
#16
amc-corey-cox
closed
1 year ago
0
Fix download and run error for hgnc and ensembl
#15
amc-corey-cox
closed
1 year ago
0
Merge monarch-initiative/ensembl_ensgal PR breaks testing
#14
amc-corey-cox
closed
1 year ago
3
Add mapping for ENSEMBL:ENSGAL
#13
amc-corey-cox
closed
1 year ago
1
Switch from BGI files to GENECROSSREFERENCE file for Alliance genes
#12
kevinschaper
closed
1 year ago
4
add scheduled github action to generate mapping
#11
glass-ships
closed
1 year ago
0
Update Xenbase BGI url
#10
kevinschaper
closed
1 year ago
1
Add github action to publish
#9
kevinschaper
closed
1 year ago
0
Add CLI utility
#8
glass-ships
closed
1 year ago
0
Limit Alliance cross reference mappping
#7
kevinschaper
closed
1 year ago
0
Flipped subject & object order to match Mondo mapping file
#6
kevinschaper
closed
1 year ago
0
Run mappings generation as a standalone process
#5
kevinschaper
closed
1 year ago
4
Add ENSEMBL:ENSGAL to NCBI mapping
#4
kevinschaper
closed
1 year ago
1
Add UniprotKB to preferred gene mappings
#3
kevinschaper
closed
1 year ago
3
Added omim to hgnc gene mapping
#1
kevinschaper
closed
2 years ago
0