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Model [01186](https://github.com/sbmlteam/sbml-test-suite/blob/7ab011efe471877987b5d6dcba8cc19a6ff71254/cases/semantic/01186/01186-model.m) (steady state metabolic model) is expected to pass in COBRAp…
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I am trying to run ODE_FBA.ipynb notebook and getting following error:
cell:
ode_config = {
'biosimulator_api': 'biosimulators_tellurium',
'model_source': MILLARD2016_PATH,
'mode…
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_From @zakandrewking on June 28, 2017 22:4_
Hi All:
I hope this is not a rehash of a previous conversation, but I could not find it, so here we go :)
Can we support non-integer charges in SBML …
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Create overview table like the one below for locally ran `LEMS_NML2_Ex9_FN` model.
- [x] run with biosimulators docker locally (on all the different engines)
The resulting minimal omex file SBML…
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### Description of the issue:
Hi everyone,
I have this issue on exporting models to Excel format. Systems Biology Ontology (SBO) terms are not properly handled in the `exportToExcelFormat()` func…
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Hi,
I'm trying to gauge the general interest in and start a discussion around extracting some of cobrapy's core functionality into a separate package. The goal of the new package would be a faithfu…
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The intro paragraph in section 1 has missing references
Genome Scale Metabolic Reconstructions (GSR’s; ?)
Level 2 or Level 3 core specification (??)
(This in https://github.com/sbmlteam/sbml-…
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sympy 1.8 satisfy requirements in environment.yml, but the code in CBLPK.py
```
if (
int(sympy.__version__.split('.')[1]) >= 7
and int(sympy.__version__.split('.')[2]) >= 4
…
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Hello,
I'm trying to install and run MetaDraft, I've run the following commands:
$ conda env create -f environment.yml (for installation)
$ conda activate metadraft3
(metadraft3) $ pytho…
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* https://github.com/matthiaskoenig/fbc_curation/
* https://github.com/SystemsBioinformatics/cbmpy