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# MPOX
Mpox is a zoonotic disease endemic in parts of Africa caused by an orthopoxvirus (same genus as smallpox). There are two pathways to human infection: animal-to-human, and human-to-human. The…
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Clades, whether using a maximum or minimum clade definition, may be defined as [crown-clades](https://en.wikipedia.org/wiki/Crown_group) or [total clades](https://en.wikipedia.org/wiki/Crown_group#Pan…
hlapp updated
3 years ago
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Hi,
Thank you for making this tool! :)
I am running Bracken 2.9 on Kraken2's report (small subsample attached below), and I am getting an out of range error. It seems to come from an empty level…
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Noting error in the automated genbank/clade-counts workflow:
- [2024-07-23](https://github.com/nextstrain/forecasts-ncov/actions/runs/10069513692)
- [2024-07-24](https://github.com/nextstrain/foreca…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
As in title, this report is forward from https://github.com/nf-core/taxprofiler/issu…
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### Current Behavior
When running `augur clade` command the JSON file produced only has a partial list of assigned clades, with the remaining showing as "unassigned". When using the `--reference` opt…
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Hi,
Do you provide any resource for the list of mutational changes per clade?
In the dataset that is acquired with Nextclade CLI, `nextstrain/sars-cov-2/wuhan-hu-1`, there is this statement in R…
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### Author(s) of proposal
Lucas V. Lima, Thaís E. Almeida & Alexandre Salino
### Name of taxon
Sticheropsis
### Rank of taxon
Genus
### Approximate number of species affected
2
…
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我已经有MLDE和Input文件的内…
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Hey guys,
Thank you for the great tool. I was using the tool to look over some kraken2 results and was unsure what the Clade counts vs Taxon counts meant. I see the read numbers for both these option…