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### Current Behavior
When running `augur clade` command the JSON file produced only has a partial list of assigned clades, with the remaining showing as "unassigned". When using the `--reference` opt…
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Hello, microeco has very conveniently implemented lefse analysis, but I have the following two questions.
![PixPin_2024-09-14_11-32-39](https://github.com/user-attachments/assets/59f73bdb-439a-4594-8…
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# Feature Request: Comprehensive Export/Import Functionality for Datalake Table Management
## Overview
First and foremost, thank you for your incredible work on the seafowl project. Your efforts i…
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Attempting to use dnConstrainedTopology() with a dnUniformTimeTree() tree distribution results in a segfault.
**To Reproduce**
```
taxon_names = ["tax1", "tax2", "tax3", "tax4"]
for (i in 1:…
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**Describe the bug**
When I mouse over clade Raoellidae, the explorer goes white and I have to use the back arrow to escape it.
**To Reproduce**
1. Search for clade Raoellidae
2. Mouse over clad…
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### Author(s) of proposal
Lucas V. Lima, Thaís E. Almeida & Alexandre Salino
### Name of taxon
Sticheropsis
### Rank of taxon
Genus
### Approximate number of species affected
2
…
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Click a clade and display statistics (i.e. what taxa are within this clade, is there more than one of a certain genus/common group and if so what percent are represented in this clade)
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Input of definitions and list of values can be found:
https://github.com/pha4ge/Wastewater_Contextual_Data_Specification/tree/main/Template
The following table combines the info from above and add…
edsu7 updated
1 month ago
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Hi Uyen,
Many thanks again for implementing the "whitelisting" option! I would like to ask whether it would also be possible to implement an option to partition TreeShrink analyses by clade. In my …
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Dear @sean-bam ,
Thanks again for a great analysis and resource!
I am interested in examining the sequences/data associated with clade4 of the phylogenetic tree. In the manuscript, clade 4 includ…