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nextstrain
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forecasts-ncov
SARS-CoV-2 variant growth rates and frequency forecasts
https://nextstrain.org/sars-cov-2/forecasts/
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Add clade definition for 24C
#106
joverlee521
closed
1 day ago
1
Add .gitattributes file
#105
genehack
closed
2 days ago
0
Model workflow failing
#104
joverlee521
closed
1 week ago
4
ingest: Update vendored scripts
#103
joverlee521
opened
2 weeks ago
0
Refactor case counts workflow
#102
joverlee521
closed
1 month ago
0
Switch AWS credentials from a long-lived IAM user to short-lived role sessions
#101
tsibley
closed
1 month ago
0
Add QC for clade sequence counts
#100
joverlee521
opened
1 month ago
0
Reduce location count thresholds
#99
trvrb
closed
2 months ago
2
Reduce clade count threshold
#98
trvrb
closed
2 months ago
1
Revisit sequence data inclusion thresholds
#97
joverlee521
closed
1 month ago
2
Update viz library
#96
joverlee521
closed
3 months ago
0
update-ncov-case-counts: Use GitHub org variable for AWS region
#95
victorlin
closed
3 months ago
0
Add clade definitions for 24A and 24B
#94
joverlee521
closed
3 months ago
4
Bump actions/configure-pages from 4 to 5
#93
dependabot[bot]
opened
3 months ago
0
Stream metadata from S3, filter, and compress
#92
huddlej
closed
3 months ago
3
update-ncov-gisaid-clade-counts: Bump memory
#91
joverlee521
closed
4 months ago
0
viz: Add growth advantage scatterplots
#90
joverlee521
opened
4 months ago
0
Update Pango lineage pivots to JN.1
#89
joverlee521
closed
4 months ago
5
Bump actions/checkout from 2 to 4
#88
dependabot[bot]
closed
2 months ago
1
Pin pandas<2.2.0
#87
victorlin
closed
5 months ago
1
Bump actions/upload-pages-artifact from 1 to 3
#86
dependabot[bot]
opened
5 months ago
0
Bump actions/deploy-pages from 1 to 4
#85
dependabot[bot]
opened
5 months ago
0
Bump conda-incubator/setup-miniconda from 2 to 3
#84
dependabot[bot]
closed
2 months ago
1
Bump actions/configure-pages from 3 to 4
#83
dependabot[bot]
closed
5 months ago
1
Bump actions/setup-node from 3 to 4
#82
dependabot[bot]
closed
5 months ago
1
ingest: restore CloudFront invalidation in upload
#81
joverlee521
closed
6 months ago
1
Reduce disk write of 20+GB metadata file by filtering on the fly
#80
corneliusroemer
closed
3 months ago
2
fix: lineage_to_clade missed a `.`
#79
corneliusroemer
closed
7 months ago
1
Add provisional colors for new clades 23G/H/I
#78
corneliusroemer
closed
7 months ago
4
Sync location threshold text with values in config
#77
corneliusroemer
opened
7 months ago
0
Country include description out of sync?
#76
corneliusroemer
opened
7 months ago
2
Add new Nextstrain clade definitions
#75
joverlee521
closed
6 months ago
1
Send Slack notifications for clades without definition
#74
joverlee521
opened
7 months ago
0
Add default clade color
#73
joverlee521
closed
7 months ago
1
Simplify viz for local files
#72
jameshadfield
closed
8 months ago
0
Flag potential lineages for new Nextstrain clades
#71
joverlee521
opened
8 months ago
1
Allow force include of Pango lineages that might not meet threshold
#70
joverlee521
opened
8 months ago
0
Add recombinant clade definition
#69
joverlee521
closed
8 months ago
1
ingest/fetch-ncov-global-case-counts: follow redirection
#68
joverlee521
closed
8 months ago
0
Unify colour & display name setting for all models
#67
jameshadfield
closed
8 months ago
4
Update lineage colour definitions
#66
jameshadfield
closed
9 months ago
2
workflows/run-models: Unpin nextstrain-base image
#65
joverlee521
closed
9 months ago
1
Force include locations
#64
corneliusroemer
opened
9 months ago
1
Document which `geo_resolution`'s are available
#63
corneliusroemer
closed
9 months ago
0
Clean up workflows
#62
joverlee521
closed
10 months ago
2
.github/workflows: use vars.SLACK_CHANNELS as default
#61
joverlee521
closed
10 months ago
1
Seq counts workflow
#60
joverlee521
closed
10 months ago
4
Update viz library
#59
jameshadfield
closed
10 months ago
0
Calculate weekly frequencies
#58
trvrb
closed
11 months ago
1
Unpin nextstrain/base image once evofr has been updated
#57
joverlee521
closed
9 months ago
0
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